Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02043 ATGACAGGGAGAAAGGTGAAACTGGCATTCATAGCCAATGATTGTGCCAGGAGGGCATCGTATAGAAGAAGGAAGAAGTCAATGTTGAAGAAGATTGAAGAACTGAGCACCCTTTGTGGAGTAGAAGCATGTGCCATAGTGTATAGCTCCTTTGATCAAGAGGCACAGATTTGGCCATCTGAATCAGGTGTGCAGAATGTGGTTGAAAAGTTCAGGACTATGCCTGAATGGAAGAAGCACAAGATGGGGAATCAGGAGAGTGTCATGGAAAAGAGCATTATGAAGGGTAAAAGGAAGATTGCGAAACTTGAAGAAGAGAATAAGGAAATGGAGATTACCATGTTCATGTTTCAATGCCTTGATACAACTAGGGTTCAGCCTCAACAAAACATGACTTTGGCAGATTTGAATCTTCTGTCATCGGTGATTGAACAGAAATTGAACGACGTTAGTAGAAGGTTGGATTTGACAGATGTTACTGAGGTGCCATACCAACCCCAGATACATACATTTGTAGATACTAATCTCAAACTCTAA 537 0.4134 MTGRKVKLAFIANDCARRASYRRRKKSMLKKIEELSTLCGVEACAIVYSSFDQEAQIWPSESGVQNVVEKFRTMPEWKKHKMGNQESVMEKSIMKGKRKIAKLEEENKEMEITMFMFQCLDTTRVQPQQNMTLADLNLLSSVIEQKLNDVSRRLDLTDVTEVPYQPQIHTFVDTNLKL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02043 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu2g02043 178 Coils Coil 93 113 - -
Vimu2g02043 178 Gene3D - 14 99 IPR036879 GO:0003677|GO:0046983
Vimu2g02043 178 CDD MADS_SRF_like 2 76 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vimu2g02043 178 PANTHER MADS BOX PROTEIN 5 126 - -
Vimu2g02043 178 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Vimu2g02043 178 FunFam agamous-like MADS-box protein AGL80 13 96 - -
Vimu2g02043 178 SUPERFAMILY SRF-like 4 82 IPR036879 GO:0003677|GO:0046983
Vimu2g02043 178 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu2g02043 178 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu2g02043 178 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu2g02043 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02043 Vimu-Chr2 15201715 15202251 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02043 1 156 Type I MADS-box Gene Family AT5G48670 45.860 3.89e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu2g02043 SRF-TF 3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02043 - - pvu:PHAVU_006G077900g 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02043 2 15201715 15202251 Vimu2g02043 2 15201715 15202251 ECH