Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02041 ATGACCAGGAGAAAGGTGAAACTTGCATTCATAGAAAACGATTCTGCAAGGAAGACAACATACAAGAAAAGGAAAAAGGGAATGCTGAAAAAGATTGAGGAACTCAGCACCCTTTGTGGAATTGATGCATGTGCTATAGTTTATGGTCCCGATGATCATGAACCAGAGGTTTGGCCATCCCATTGTGAGGTCCAAAAGGTGGTTGGAAGGTTCAGGAACTTGCCTGCAGTGGAGAAAATCAAGAAGATGGTGAACCAGGAGAGCTTCATAGGACAAAGGATCCAAAAGGGTAACCAACAAATAATGAAACTTATGAAGGAGAATGCGGAGAAGGAGTTGAGCTTGTTCATGTTTCAATGCCTTACTGAAGGTAGGGTTTTGCCAGATGAAAATAGCATGATCTTGGCTGATTTGAATGTACTTTCATCAGTGATTGAACAAAACCTTAAAGAGATTGATAAAAGGTTGCAAACGCTGAATGTTAATCAGATACAACCGAATCAACAACCTGAGATGCAAACATCAGTATTCCAATCACAGTTGAAAACAGCATCGTATCAACCGCATTTGCAAATGGCACTTATGAGTTCTGGACATGGGTTGGATATGGATGTGAATCCCATGCAAAGGTTGTTGTTTATGAACTTGCTTAATGGTAATAGAGATGAGACAATAATGCCTCCATTTGGTGATCCTAATCTCTAG 705 0.4028 MTRRKVKLAFIENDSARKTTYKKRKKGMLKKIEELSTLCGIDACAIVYGPDDHEPEVWPSHCEVQKVVGRFRNLPAVEKIKKMVNQESFIGQRIQKGNQQIMKLMKENAEKELSLFMFQCLTEGRVLPDENSMILADLNVLSSVIEQNLKEIDKRLQTLNVNQIQPNQQPEMQTSVFQSQLKTASYQPHLQMALMSSGHGLDMDVNPMQRLLFMNLLNGNRDETIMPPFGDPNL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02041 234 Gene3D - 13 108 IPR036879 GO:0003677|GO:0046983
Vimu2g02041 234 PANTHER MADS BOX PROTEIN 3 159 - -
Vimu2g02041 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Vimu2g02041 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu2g02041 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu2g02041 234 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vimu2g02041 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu2g02041 234 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vimu2g02041 234 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vimu2g02041 234 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02041 Vimu-Chr2 15187181 15187885 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02041 1 159 Type I MADS-box Gene Family AT5G48670 52.201 2.71e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu2g02041 SRF-TF 4.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02041 - - vra:106752453 401.364