Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02040 ATGGACACGGACATTTCCCGGTGGGTGATGGAGTTCCTTCTCCGCAGTTCCGTCCCCGATTCCCTAATCCAAAAAGCCCTAACCGTCCTTCCTCTCTCCGGGGCCGATTCCCGCTTCAAGAAGACCCTTCTACTTCGCACTCTCCGCACCCTCCTCCTCAAGGCCTCCCTCTCTGAAACTGCGCTCCAAATCCTCGAACACCTCGAAGAACTCGATGGTGTCTCCACCTCCGTCGCGCTCCGCCGCGCGTACCTGGCCGTTGCCGTCGAGTGCACTGTCAAGTACCTCGCCGCCGCCCCCGATGACCCCGAGGGGGAGTTTTCTGGCGCCGTGAAGCGGATCTGGCGCGGCCGCGTGGCGGCCCTGGAGGCGCGCCGGAGCGGGCTGGTGTCTGGCGAGCTGGTGCGGTGGCGGGACGACGTGGAGGCAGCGCTTGGGGATTCTAGGGCTTGCGAGAGGCTGGCGGATTTCAATAGCAGGAGGGAGGCGATTAAAGAGGTGAGGGCGTATTTGAAGGAAGCGTGGGAATCGATGGGTCCTTCGTTCTTGGAATCGGTTGCGGCGATGTCGAAGGGTTTAACCAAGGAGAAAGAGGATTTTGTTATTAGTCGTGACGGGTGTGATAATGATCATGATAATGGAAATGATGGTGATCATGGCTGCATGGAGGATGTGGTAATGCATGATGAGAATCAGACCAAGCAACAATTGGAAGAGAAAACTGAGGCGAATCAGGAAGTGGGTGGATGTGACTTGCTACTTCAGGGAGATAAAGTAATTCAAAAGCGGAATCTTCGGGTTAAACACAAACACTCTGCACTTCGTGCATGTCATAGGGGAGTTAAAATAAATGATTCAGAGGAAGTGGAGTCCGCAAAATCACTGAGCAAACATGATTCTGTTCCTAGTTCTGAAGTAAAAAAAGTTAGAGAATCCCTTAAATCAAGTTCTTGCGATTTAAGAGCATTGGTCAAAGATCCTCTTCCTGATGCATTGCATTTATCTGAAGCTGTAAGATCGAAATTGGCTACTAGTGGTACAAATATTGAGCCACCTATTGAAAAGCAGAGTACAGATGTAGATGTACCAGATCCAAATGTTTGCCAGAGTATTGTACTTTTTCAGTCTAATGATGCCAATCTTGGGAAGGAGTCTTCTGTTCATTCTAGTGATTTACATCAGCCCAACTTAATGGAACGAAACAGAAGTGCCCAGACATTTGAGTGGGATGATTCAATAGATAACTCGCCACAAGCAAGACAGACTAGGAGGAGGAAAAGGAGATGGAGTTCTTTGGAAGAGGAGACACTAAGGGCCGGTGTAAAAATGTTTGGCGAAGGAAACTGGGCAACAATAAAAAGTTTTTACAGTAACATATTTGACAACAGAAGTGGAGTTGATCTGAAGGACAAGTGGAGAAACATGTTACGATGA 1434 0.4923 MDTDISRWVMEFLLRSSVPDSLIQKALTVLPLSGADSRFKKTLLLRTLRTLLLKASLSETALQILEHLEELDGVSTSVALRRAYLAVAVECTVKYLAAAPDDPEGEFSGAVKRIWRGRVAALEARRSGLVSGELVRWRDDVEAALGDSRACERLADFNSRREAIKEVRAYLKEAWESMGPSFLESVAAMSKGLTKEKEDFVISRDGCDNDHDNGNDGDHGCMEDVVMHDENQTKQQLEEKTEANQEVGGCDLLLQGDKVIQKRNLRVKHKHSALRACHRGVKINDSEEVESAKSLSKHDSVPSSEVKKVRESLKSSSCDLRALVKDPLPDALHLSEAVRSKLATSGTNIEPPIEKQSTDVDVPDPNVCQSIVLFQSNDANLGKESSVHSSDLHQPNLMERNRSAQTFEWDDSIDNSPQARQTRRRKRRWSSLEEETLRAGVKMFGEGNWATIKSFYSNIFDNRSGVDLKDKWRNMLR 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02040 477 CDD SANT_TRF 429 477 - -
Vimu2g02040 477 MobiDBLite consensus disorder prediction 343 362 - -
Vimu2g02040 477 SUPERFAMILY Homeodomain-like 423 477 IPR009057 -
Vimu2g02040 477 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 423 477 IPR017930 -
Vimu2g02040 477 MobiDBLite consensus disorder prediction 408 429 - -
Vimu2g02040 477 Gene3D - 417 477 - -
Vimu2g02040 477 ProSiteProfiles Myb-like domain profile. 421 476 IPR001005 -
Vimu2g02040 477 PANTHER MYB TRANSCRIPTION FACTOR 1 477 - -
Vimu2g02040 477 SMART sant 425 477 IPR001005 -
Vimu2g02040 477 MobiDBLite consensus disorder prediction 286 308 - -
Vimu2g02040 477 Pfam Myb-like DNA-binding domain 426 476 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02040 429 476 Single Myb Histone (SMH) Gene Family AT1G15720 54.167 4.29e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu2g02040 Myb_DNA-binding 3.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02040 - K11111 vun:114187915 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02040 2 15169170 15176851 Vimu2g02040 2 15169170 15176851 ECH