LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu2g02007	ATGCTCGGAGGAGCAGACAATCCATCCAATGCAGTTGAGTGTGCACTTGTAGAAATGATAAATCAACCGGATATACTTCAGAAAGCTACTGATGAAGTAGACAAGGTTGTCGGTAAACAAAGGATGGTGCAGGAATCAGATGTTCCAAAACTGAATTATGTAAAGGCTTGTGTTAGAGAAGCTTTTCGTCTTCATCCAGTGGTGCCTTTTAATCCTCCTCATGTCTCAAGCAATGACACAATGGTGGGAAACTATTTTATTCCAAAAGGTAGTCATGTACTTCTAAGCAGACACGGACTTGGAAGAAACCCTAAAGTGTGGAATGAAGCAGACAAGTTCAAACCTGAACGTCATGAAAAGAATGATGGATCTATGGTAGTTTTGTCAGAACCAGATTTGACGTTCATATCATTTGGCACAGGAAGGAGAGGTTGTCCTGCAATCGTTCTTGGCTCCACCATGACTGTGATTTTGTTGGCAAGGTTGATTCATGGCTTTTCTTGGAGTGCACCTCCAAATGTATCAAGTATCAATATTGTTAAGTCTGCTAATGGTGGTATGCTTGCTGAGCCACTTGTGTTAGAAGCCAAACCAAGATTAGCACCAGAGTTGTATTACATATAA	624	0.4103	MLGGADNPSNAVECALVEMINQPDILQKATDEVDKVVGKQRMVQESDVPKLNYVKACVREAFRLHPVVPFNPPHVSSNDTMVGNYFIPKGSHVLLSRHGLGRNPKVWNEADKFKPERHEKNDGSMVVLSEPDLTFISFGTGRRGCPAIVLGSTMTVILLARLIHGFSWSAPPNVSSINIVKSANGGMLAEPLVLEAKPRLAPELYYI	207

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu2g02007	207	PANTHER	CYTOCHROME P450 703A2-RELATED-RELATED	1	207	-	-
	Vimu2g02007	207	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	138	147	IPR017972	GO:0005506\|GO:0016705
	Vimu2g02007	207	PRINTS	E-class P450 group I signature	145	168	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vimu2g02007	207	PRINTS	E-class P450 group I signature	12	38	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vimu2g02007	207	PRINTS	E-class P450 group I signature	55	73	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vimu2g02007	207	PRINTS	E-class P450 group I signature	96	120	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vimu2g02007	207	PRINTS	E-class P450 group I signature	135	145	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vimu2g02007	207	PRINTS	P450 superfamily signature	56	67	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vimu2g02007	207	PRINTS	P450 superfamily signature	136	145	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vimu2g02007	207	PRINTS	P450 superfamily signature	3	20	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu2g02007	Vimu-Chr2	14774328	14774951	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu2g02007	1	205	Cytochrome P450	AT5G05260	59.024	6.40e-83	254

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu2g02007	-		-	pvu:PHAVU_006G0792000	390.578

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