Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02007 ATGCTCGGAGGAGCAGACAATCCATCCAATGCAGTTGAGTGTGCACTTGTAGAAATGATAAATCAACCGGATATACTTCAGAAAGCTACTGATGAAGTAGACAAGGTTGTCGGTAAACAAAGGATGGTGCAGGAATCAGATGTTCCAAAACTGAATTATGTAAAGGCTTGTGTTAGAGAAGCTTTTCGTCTTCATCCAGTGGTGCCTTTTAATCCTCCTCATGTCTCAAGCAATGACACAATGGTGGGAAACTATTTTATTCCAAAAGGTAGTCATGTACTTCTAAGCAGACACGGACTTGGAAGAAACCCTAAAGTGTGGAATGAAGCAGACAAGTTCAAACCTGAACGTCATGAAAAGAATGATGGATCTATGGTAGTTTTGTCAGAACCAGATTTGACGTTCATATCATTTGGCACAGGAAGGAGAGGTTGTCCTGCAATCGTTCTTGGCTCCACCATGACTGTGATTTTGTTGGCAAGGTTGATTCATGGCTTTTCTTGGAGTGCACCTCCAAATGTATCAAGTATCAATATTGTTAAGTCTGCTAATGGTGGTATGCTTGCTGAGCCACTTGTGTTAGAAGCCAAACCAAGATTAGCACCAGAGTTGTATTACATATAA 624 0.4103 MLGGADNPSNAVECALVEMINQPDILQKATDEVDKVVGKQRMVQESDVPKLNYVKACVREAFRLHPVVPFNPPHVSSNDTMVGNYFIPKGSHVLLSRHGLGRNPKVWNEADKFKPERHEKNDGSMVVLSEPDLTFISFGTGRRGCPAIVLGSTMTVILLARLIHGFSWSAPPNVSSINIVKSANGGMLAEPLVLEAKPRLAPELYYI 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02007 207 PANTHER CYTOCHROME P450 703A2-RELATED-RELATED 1 207 - -
Vimu2g02007 207 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 138 147 IPR017972 GO:0005506|GO:0016705
Vimu2g02007 207 PRINTS E-class P450 group I signature 145 168 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02007 207 PRINTS E-class P450 group I signature 12 38 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02007 207 PRINTS E-class P450 group I signature 55 73 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02007 207 PRINTS E-class P450 group I signature 96 120 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02007 207 PRINTS E-class P450 group I signature 135 145 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02007 207 PRINTS P450 superfamily signature 56 67 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02007 207 PRINTS P450 superfamily signature 136 145 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02007 207 PRINTS P450 superfamily signature 3 20 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02007 207 Pfam Cytochrome P450 1 183 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02007 207 Gene3D Cytochrome P450 1 202 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02007 207 SUPERFAMILY Cytochrome P450 1 199 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02007 Vimu-Chr2 14774328 14774951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02007 1 205 Cytochrome P450 AT5G05260 59.024 6.40e-83 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02007 - - pvu:PHAVU_006G0792000 390.578