Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02006 GGAATTTTGGATTTTATATTAATGGGTTCTGATATTTGCGTCGTTAATGGTTCGTGCACTCATGAATGGAGAAAGGGGTGGCCTCTGCGATCTGGTGGATTCGCCCAACTGTGCTGCAAGTGCGGATTTATGGAGGAGTGGAAGGGTGACATCCATGAGCCATTATCCGCCTACGAGAATTCAGTTTTCTGCAGCAAATTTCATCACCAACAAACTGGTTGGAGGGAGTGTAACTTTTGCAACAAGCCTATCCACTGCGGTTGCATGGTATCTAAATCTTTGTTCGAGCATCTTGACTTTGGTGGTATAGGATGTGTTAGCTGTGTAAATACTAGCCAACTTAGTACGATGAGGAATATTGAAAATCCAAATGGGCCTGTTTCATTGATAAAAAAAAATTCAAGTGATCGGCCTTCTCGTTCTGAGGGAAGACTGTTTGCACGAGGTGTTGATGAAGGAAAGCTTATGCAATTCTGCAAAATTATTGAAGCTAGTGAATCCAGCCGATGGAATAATGCTCAAAAAGATGGCACCATTTCACGTCATGGGAACAACAACGAAGAAGCCAAATGTTCATTTGGGGAAGGAGACATTGGTTTTTCAAAAGTGGTGAAGCCATCTGTTCAGTCATTAACATTTGCTACATTAGAAAATAATAGGTCACCATGGGAGATTAAAAACATCCACGAAGCAAATGTGCAGCCATCATTGAGTATGTACTTGGGAAATGCATCTGGGAACAACTCTGTCCTGCCTTCTGCTGGAGAGGCTGTGGAAGGAACACTTGAGAGAAAAACGTCTCCACCTTTTCATCAAGGGCAAAGATCTCGCCCTATATTTCCAAAACCGGTGAAGAGTGGGCTTACCATGAATGTGGAAATAGATAAAGGTACAATTTCTCAATCTCGAGTTGCTCGGCCACCTGCAGATGGCAGAGGAAAGAATCAGTTACTTCCTCGATATTGGCCGAGGATTACCGATCAAGAGCTGGAGCGACTATCTGGAGATTTGAAATCCACCGTTGTGCCATTATTTGAGAAGGTATTAAGTGCCAGTGATGCTGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGCGCTGAGGCATATTTCCCTTCTATTTCACAATCTGAGGGTGTTCCTTTGCGAATGCAAGATGTGAAGGGGAACGAGTGGACATTTCAGTTCAGATTTTGGCCAAATAACAACAGTAGAATGTACGTATTGGAGGGTGTGACCCCATGCATACAGACCATGCAATTACGCGCTGGTGATACTGTAACATTTAGTCGGATAGACCCAGGAGGCAAACTTGTAATGGGTTTCAGAAGGGCATCAAATTCTGCAGATACACAGGATACCTCCACATCTGCACAATCTAATTCAGCAAAGGGAGCCACCTCTGCTGGAACTGAGAATCTGCCATCAGGGAGTAATCATGCCAATCTTCTTCTTTCAATGAAGGGGAATGTGGAACCTAAGTTTAATGGACAAAGAGAACATCCACTTTTGGGTACTGGAACTTCTGGGCTGCATATAACTGAAACTAATGGGATGATGACAAACAATACATCACTACAGCGAAAAGTTTCGGTTTTAGAGAAGAAGAAGACTCGTAATATTGGGCCAAAAAGTAAGAGGCTGCTTATTGACAATGAAGATGCTAGGGAGCTAAAACTTACATGGGAAGAAGCACAGGATTTACTTCGTCCTCCTCCTAGTGTCAAGCCAAGCATTGTCACAATTGAGGACCAAGTATTTGAAGAATATGATGAACCCCCAGTTTTTGGAAAGAGAACTATATTCAGTACCTGTTCTTCTGGGGTGAAGGAACAATGGGCTCAATGTGATGATTGTTCTAAATGGCGAAAGCTTCCAGTTGATGCTCTTCTTCCTGCCAATTGGACATGTTTTGACAATGCTTGGGATTCAAGAAGATGTTCATGCACAGTACCTGAAGAGCTAAGTTCAGGGGAATTGGAAAGTCTTTTGAAAACCGACAAAGATTTTAAGAAGCGACGAAGTGATGAAAAGAGCAAGTCAATCCAAGAATACGAGGCATCTGGCTTGGAAGCTCTTGCCAGTGCAGCAGCCCTGGGAGAAAATCTTGTTGACACGGCGGAATCATCAGCCGGACCCACCACCAAGCATCCCAGACACCGTCCCGGCTGCTCTTGCATTGTGTGCATCCAGCCACCGAGTGGCAAGGGGCGACACAAGCCGACATGCGCATGCAACGTGTGCCTGACCGTGAAGCGGCGGTTCAAAACCCTCATGCTGCGAAAGAAGAAACGGCAATCCGAACGCGAAGCAGAAGCTGCCCAGAAAGATCAAGTTCTTCCCAAAGAGGAGTCAGATACCAATGAAACATCAAGAGATGATGCAACTCAGTTGGAGAAAGAGGTAGTAGGACTAAGCAGAAGTCAAGCTGAAGTGGGTGAGTCCAGTGCTGCTGGACAAATTGATCTGAATTCTGATCCCAACCATGAAGACATGGTTGATTTATCAGCAATTTTCTTTTGTGAATCAGACCCTACTACAGAACATGAATATATGAACCAAAATGATCCAAGAAGCTACAACAATGAATTGCAGAATGGTGAGAATTCTTCTTTGCACACTCCTCAATCCAATGGAGAAGGTCACAGACACTTCTCTGATCTAAGAAGCTTTGCATCCATTATGTGGAACCAAGAAAGAAGAGATGAGGAAGACAGTGAACCCAACCAAAACAATCTTTGTTAA 2745 0.4404 GILDFILMGSDICVVNGSCTHEWRKGWPLRSGGFAQLCCKCGFMEEWKGDIHEPLSAYENSVFCSKFHHQQTGWRECNFCNKPIHCGCMVSKSLFEHLDFGGIGCVSCVNTSQLSTMRNIENPNGPVSLIKKNSSDRPSRSEGRLFARGVDEGKLMQFCKIIEASESSRWNNAQKDGTISRHGNNNEEAKCSFGEGDIGFSKVVKPSVQSLTFATLENNRSPWEIKNIHEANVQPSLSMYLGNASGNNSVLPSAGEAVEGTLERKTSPPFHQGQRSRPIFPKPVKSGLTMNVEIDKGTISQSRVARPPADGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPSISQSEGVPLRMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQTMQLRAGDTVTFSRIDPGGKLVMGFRRASNSADTQDTSTSAQSNSAKGATSAGTENLPSGSNHANLLLSMKGNVEPKFNGQREHPLLGTGTSGLHITETNGMMTNNTSLQRKVSVLEKKKTRNIGPKSKRLLIDNEDARELKLTWEEAQDLLRPPPSVKPSIVTIEDQVFEEYDEPPVFGKRTIFSTCSSGVKEQWAQCDDCSKWRKLPVDALLPANWTCFDNAWDSRRCSCTVPEELSSGELESLLKTDKDFKKRRSDEKSKSIQEYEASGLEALASAAALGENLVDTAESSAGPTTKHPRHRPGCSCIVCIQPPSGKGRHKPTCACNVCLTVKRRFKTLMLRKKKRQSEREAEAAQKDQVLPKEESDTNETSRDDATQLEKEVVGLSRSQAEVGESSAAGQIDLNSDPNHEDMVDLSAIFFCESDPTTEHEYMNQNDPRSYNNELQNGENSSLHTPQSNGEGHRHFSDLRSFASIMWNQERRDEEDSEPNQNNLC 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02006 914 SMART B3_2 345 446 IPR003340 GO:0003677
Vimu2g02006 914 MobiDBLite consensus disorder prediction 763 800 - -
Vimu2g02006 914 MobiDBLite consensus disorder prediction 847 886 - -
Vimu2g02006 914 Pfam CW-type Zinc Finger 612 654 IPR011124 GO:0008270
Vimu2g02006 914 MobiDBLite consensus disorder prediction 809 823 - -
Vimu2g02006 914 MobiDBLite consensus disorder prediction 125 144 - -
Vimu2g02006 914 ProSiteProfiles B3 DNA-binding domain profile. 345 446 IPR003340 GO:0003677
Vimu2g02006 914 CDD B3_DNA 343 444 IPR003340 GO:0003677
Vimu2g02006 914 Pfam B3 DNA binding domain 345 445 IPR003340 GO:0003677
Vimu2g02006 914 MobiDBLite consensus disorder prediction 847 879 - -
Vimu2g02006 914 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 11 866 - -
Vimu2g02006 914 Gene3D - 610 665 - -
Vimu2g02006 914 Gene3D - 323 450 IPR015300 -
Vimu2g02006 914 MobiDBLite consensus disorder prediction 445 481 - -
Vimu2g02006 914 ProSiteProfiles Zinc finger CW-type profile. 607 657 IPR011124 GO:0008270
Vimu2g02006 914 SUPERFAMILY DNA-binding pseudobarrel domain 343 444 IPR015300 -
Vimu2g02006 914 FunFam B3 domain-containing transcription repressor VAL1 323 450 - -
Vimu2g02006 914 MobiDBLite consensus disorder prediction 444 481 - -
Vimu2g02006 914 MobiDBLite consensus disorder prediction 760 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02006 Vimu-Chr2 14751401 14757798 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02006 6 838 B3 DNA Binding Superfamily AT2G30470 47.518 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu2g02006 B3 5.7e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02006 K09287 - gmx:100789848 1462.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02006 2 14751401 14757798 Vimu2g02006 2 14751401 14757798 ECH
Vimu2g02006 2 14751401 14757798 Vimu1g01259 1 9918679 9925370 PCT