Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02003 ATGAAAGACACATTTCAAACTCCAATCACACTCACCGGCTTGCTCCGCCACGTCGCTGCCAAATTCCCCTCCCGTCGAGCCATCTCCGTCGCCGCCAAATACGACATCACCCACTCCCGCCTCCACCACCTCACAGAATCCACCGCCGCTCGATTGGTCGCTGCCGGTATCAAACCGGGCGACGTTGTCGCCCTCGTCTTCCCCAACACCGTCGAGTTTGTTGTCATGTTTTTAGCCGTCATTCGAGCCCGAGCCACAGCGGCGCCGTTAAACCCAGCTTACACGGCCGATGAGTTTGAGTTTTACTTATCCGACTCAGATTCAAAGCTTCTGGTCACATCATTGGAAGGAAACACGCCGGCTCAAGCTGCAGCTTCGAAACTCAATATCGCTCACGCCGCGGCTTCTTTGACCCAAAGTGAGAACGAAGAAGCCGAGTTGAGTCTCTCGTTGAGCCACTCGTTTGACTCGGTTGAGTCACTCGTTAACGATCCTGCTGACGTGGCGCTTTTCCTTCACACCTCCGGAACCACGAGCCGTCCCAAGGGGGTGCCGCTGACTCAGGATAACTTGCTCTCTTCCGTGAGGAACATTGACTCGGTGTATCGACTCACTGAGTCTGACTCGACGGTGATTGTGCTTCCGCTGTTCCACGTGCACGGGTTGATCGCTGGGCTGCTGAGTTCTCTAGGCGCCGGCGCGGCGGTTGCGTTACCGGCGGCAGGGAGGTTCTCCGCTTCAGCATTCTGGAAGGACATGGTTAAGTACAACGCCACGTGGTACACTGCGGTTCCTACCATACACCAGATCATACTGGATCGCCACTTTAACAATCCCGAACCGGTTTACCCGAGGCTCCGGTTCATCCGAAGCTGCAGCGCGTCTCTTGCACCGGCTATCATGGGTAGACTGGAGGAGGCTTTCAGTGCCCCCGTCTTGGAGGCTTATGCAATGACGGAAGCCTCGCATCTCATGGCTTCGAACCCTTTGCCCCAAGATGGGCCCCACAAGGCCGGGTCGGTTGGGAAGCCCGTAGGCCAAGAAATGGGTATACTGGATGAGTCGGGTCGGGTCCAGGAGGTCGGAGTTAGTGGAGAGGTTTGCATTCGCGGATCCAATGTAACGAAAGGATATAAAAACAACGTTGGAGCTAACACGGCGGCGTTTCAGTTCGATTGGTTTCACACCGGTGATATTGGATACTTTGATTCTGATGGTTATTTGCACCTAGTGGGTCGGATCAAGGAACTCATCAACCGCGGAGGTGAAAAGATATCACCAATAGAAGTTGATGCTGTCCTTCTTTCACACCAGGACATTGCTCAAGCAGTTGCTTTCGGAGTGCCTGATCCAAAGTATGGGGAGGAGATATATTGTGCTGTGATCCCAAGAGAAGGATCAAACATTGATGAGGCAGAGTTGCTAAGATACAGCAAGAAGAATCTTGCATCCTTCAAAGTCCCCAAAAAGGTTTTCATCACTGATGCTTTGCCCAAGACTGCCACAGGAAAGATTCTGCGCCGACTTGTGGCAGAACACTTCGTCTCTCAAATTTGA 1557 0.5331 MKDTFQTPITLTGLLRHVAAKFPSRRAISVAAKYDITHSRLHHLTESTAARLVAAGIKPGDVVALVFPNTVEFVVMFLAVIRARATAAPLNPAYTADEFEFYLSDSDSKLLVTSLEGNTPAQAAASKLNIAHAAASLTQSENEEAELSLSLSHSFDSVESLVNDPADVALFLHTSGTTSRPKGVPLTQDNLLSSVRNIDSVYRLTESDSTVIVLPLFHVHGLIAGLLSSLGAGAAVALPAAGRFSASAFWKDMVKYNATWYTAVPTIHQIILDRHFNNPEPVYPRLRFIRSCSASLAPAIMGRLEEAFSAPVLEAYAMTEASHLMASNPLPQDGPHKAGSVGKPVGQEMGILDESGRVQEVGVSGEVCIRGSNVTKGYKNNVGANTAAFQFDWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHQDIAQAVAFGVPDPKYGEEIYCAVIPREGSNIDEAELLRYSKKNLASFKVPKKVFITDALPKTATGKILRRLVAEHFVSQI 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02003 518 Pfam AMP-binding enzyme 16 420 IPR000873 -
Vimu2g02003 518 Gene3D - 9 413 IPR042099 -
Vimu2g02003 518 FunFam Peroxisomal-coenzyme A synthetase 10 413 - -
Vimu2g02003 518 ProSitePatterns Putative AMP-binding domain signature. 171 182 IPR020845 -
Vimu2g02003 518 PANTHER ACYL-COA SYNTHETASE 10 515 - -
Vimu2g02003 518 Pfam AMP-binding enzyme C-terminal domain 429 504 IPR025110 -
Vimu2g02003 518 SUPERFAMILY Acetyl-CoA synthetase-like 8 516 - -
Vimu2g02003 518 Gene3D - 414 516 IPR045851 -
Vimu2g02003 518 CDD FACL_fum10p_like 23 512 IPR045310 GO:0016874
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02003 Vimu-Chr2 14717966 14720625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02003 10 518 Monolignol Biosynthesis Gene Families AT4G05160 30.418 2.00e-57 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02003 K22133 - gmx:100817853 874.774