Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02002 ATGGCAGATTCCAACGTAGTTCTGCTGGATTTCTGGCCAAGCTCTTACGGAATGAGAGTGAAAATCGCTTTGGCAGAGAAGGGTATCTCGTATGAGTGCAAGCAAGAAGATTTAGAAGCTAAAAGCTCTCTGCTTCTAGAGATGAACCCAGTTCACAAAATGATACCAGTTTTGATTCATAATGAAAAACCCATCTGCGAGTCACTGAATATTGTTGAGTACATTGATGAGACATGGAAACACAAATCTCTGCTTCCCTCTGACCCTTACAAGCGATCCCAAGCAAGATTTTGGGGCGATTACATTGACAAAAATATATACAATGGTGTGAAGAGGGTATGGACGGGGAAGGGTAAAAAGCAAGAAGAGTGGAAGAAAGAATTGATAGAATGTTTGAAGAGGGTGGAAGATGAACTTGGAGACAAGGCATATTTTGGTGGTGAAGAGTTTGGGTATGTGGATGTGGCTCTTGTTCCTTTCACTAGCTGGTTTTACACTGTTGAGACGTTTGGGAAACTAAGCATTGAAGATGAGTGTCCAAAACTTGTGGCTTGGGCCAAAAGGTGCATGCTGAAAGAGACTGTGGCCTCATCACTCCCTCACCATCAACAGATCTATGCTTTTGCCCTGCAATATAAACACAGACATGGACTTCAGTAG 660 0.4273 MADSNVVLLDFWPSSYGMRVKIALAEKGISYECKQEDLEAKSSLLLEMNPVHKMIPVLIHNEKPICESLNIVEYIDETWKHKSLLPSDPYKRSQARFWGDYIDKNIYNGVKRVWTGKGKKQEEWKKELIECLKRVEDELGDKAYFGGEEFGYVDVALVPFTSWFYTVETFGKLSIEDECPKLVAWAKRCMLKETVASSLPHHQQIYAFALQYKHRHGLQ 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02002 219 FunFam Glutathione S-transferase U20 88 219 - -
Vimu2g02002 219 SUPERFAMILY GST C-terminal domain-like 77 215 IPR036282 -
Vimu2g02002 219 Pfam Glutathione S-transferase, N-terminal domain 6 77 IPR004045 -
Vimu2g02002 219 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 83 IPR004045 -
Vimu2g02002 219 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 208 IPR010987 -
Vimu2g02002 219 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
Vimu2g02002 219 Gene3D - 88 219 - -
Vimu2g02002 219 CDD GST_N_Tau 6 79 - -
Vimu2g02002 219 SFLD Main (cytGST) 2 215 - -
Vimu2g02002 219 Pfam Glutathione S-transferase, C-terminal domain 122 188 - -
Vimu2g02002 219 SFLD Main.3: Omega- and Tau-like 2 215 IPR045073 -
Vimu2g02002 219 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 9 206 IPR045073 -
Vimu2g02002 219 CDD GST_C_Tau 89 212 IPR045074 GO:0004364|GO:0006749
Vimu2g02002 219 FunFam Tau class glutathione S-transferase 1 87 - -
Vimu2g02002 219 Gene3D Glutaredoxin 1 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02002 Vimu-Chr2 14714252 14715040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02002 1 219 Glutathione S-transferase Gene Family AT1G17180 57.727 1.81e-93 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02002 K00799 - gmx:100527221 385.956