Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02000 ATGGATCTTCTCTTCTTACCAAAAGTTCTTACCGCGCTCTTCTTTGCGGCGGTGATCGCAGTGACCGCTGCAAAGCTTCGCGGGAAGCGGTTCAAGCTGCCACCGGGACCGTTTTCTGTACCGATATTTGGTAACTGGCTTCAGGTTGGCGATGACCTGAATCACCTTACCCTTGCCGACATTGCACGTCGCTTTGGCGACATATTTCTCCTTCGCATGGGGCAGCGGAATTTGGTGGTGGTCTCTTCGCCGGAGCTCGCGAAGGAGGTTCTCCACACACAGGGCGTGGAGTTCGGCTCGCGCACGCGCAACGTCGTCTTCGACATCTTCACCGGGAAAGGCCAGGACATGGTGTTCACCGAGTACGGTGAGCACTGGCGCAAGATGCGCCGCATAATGACGGTCCCGTTCTTCACCAACAAGGTAGTGCAGCAGTACCGCGTCGGGTGGGAGGACGAGGCGGCGCGTGTAGTGGAGGACGTACGCCGCAGCCCCGACGCCGCGGCTGGAGGGATCGTTCTACGGCGGAGACTGCAACTCATGGTGTATAACATGATGTATAGGATCATGTTCGATAGAAGGTTCGAGAACGAGGAGGACCCGTTGTTTCAGAAGCTTCGAGTTTTGAACGGTGAGAGGAGTCGTTTGGGGCAGAGCTTTGAGTACAACTACGGTGATTTTATCCCCGTCTTGCGGCCATTTTTGCGTGGGTACTTGAAGATTTGCAAGGAGGTTAAGGACACCAGGTTCAAACTCTTCAAGGATTATTTCATCGAGGAACGAAAGAATCTTGAAAATACCAAGAAAAGGGACAATGGAGGACTTAAATGCGCCATCGATCACATTTTGGATGCTCAGAGAAAAGGAGAGATTAGTGAGGATAATGTCCTTTACATTGTTGAGAACATTAACGTTGCTGTGAGAGTTTTGGAAGAAAAGTTTTCTGATGTACATAATGTTGAATTTGGAGCAGCAATTGAGACAACTCTGTGGTCAATTGAATGGAGCATTGCTGAGCTTGTGAACCACCCAGAGATCCAAAACAAGGTGAGGGAGGAGATTGAGAGAGTTGTAGGAGCAGAACACCAAGTGACAGAGCAAGACATTCACAAGCTCACTTACCTACAGGCAGTGATAAAGGAAACGCTTCGGCTGAGAATGGCAATTCCACTCCTTGTCCCACACATGAACCTCCATGATGCTAAACTTGGAGGCTATGACATCCCTGCAGAAAGCAAGATCTTGGTGAATGCATGGTGGCTTGCCAACAACCCTGCTCAGTGGAAGAAGCCCGAGGAGTTCAGGCCTGAGAGGTTTTTGGAGGAAGAGTCCAAAGTAGAGGCGAATGGGAATGACTTCAGATACCTTCCCTTTGGTGTTGGGAGGAGGAGCTGCCCTGGAATTATCCTTGCATTGCCTATTCTGGGCATTACTTTGGGGCGTTTGGTCCAAAATTTTCAGCTCTTACCTCCCCCAGGACAAGACAAGCTTGATACCACTGAGAAAGGCGGCCAGTTTAGTCTGCACATACTCAAGCACTCAACCATCGTCGCAAACCCAATATCATTTTAA 1572 0.5019 MDLLFLPKVLTALFFAAVIAVTAAKLRGKRFKLPPGPFSVPIFGNWLQVGDDLNHLTLADIARRFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTEYGEHWRKMRRIMTVPFFTNKVVQQYRVGWEDEAARVVEDVRRSPDAAAGGIVLRRRLQLMVYNMMYRIMFDRRFENEEDPLFQKLRVLNGERSRLGQSFEYNYGDFIPVLRPFLRGYLKICKEVKDTRFKLFKDYFIEERKNLENTKKRDNGGLKCAIDHILDAQRKGEISEDNVLYIVENINVAVRVLEEKFSDVHNVEFGAAIETTLWSIEWSIAELVNHPEIQNKVREEIERVVGAEHQVTEQDIHKLTYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDIPAESKILVNAWWLANNPAQWKKPEEFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFQLLPPPGQDKLDTTEKGGQFSLHILKHSTIVANPISF 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02000 523 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Vimu2g02000 523 FunFam Trans-cinnamate 4-monooxygenase 23 515 - -
Vimu2g02000 523 PRINTS P450 superfamily signature 377 388 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02000 523 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02000 523 PRINTS P450 superfamily signature 324 341 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02000 523 Pfam Cytochrome P450 34 513 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02000 523 SUPERFAMILY Cytochrome P450 34 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02000 523 CDD CYP73 63 514 - -
Vimu2g02000 523 Gene3D Cytochrome P450 23 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02000 523 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02000 523 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02000 523 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02000 523 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02000 523 PRINTS E-class P450 group I signature 333 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02000 523 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02000 523 PRINTS E-class P450 group I signature 417 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02000 523 PRINTS E-class P450 group I signature 376 394 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02000 523 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 2 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02000 Vimu-Chr2 14709566 14712254 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02000 1 520 Monolignol Biosynthesis Gene Families AT2G30490 76.538 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02000 K00487 - nnu:104593756 867.84