Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01999 ATGTCGTATGTGCCTCCGCACCTCCGAAATAACGGCTCCGCCACCGTCGCCACCGCCAGAACCCCCTCCGTAACCCTAGACAACAACAACCACCACCACCACAACCATAACAACCACCACAAGCTTGCATTCACCTCCAACAACAACAACAACACCAACGCCAATGGCTCTCCCTCGCTCCCCTCCTTCCACAATGCCTCTCGCCGGAGCTCCGCCGCACTTCCGTCGCCGAGGATTTTCGCCACACCTGACCCCGTCTTCCCGCAATGGCAACCCTCTGAACGCGCTTCGCGCATGACTCCGGAGCAGATTGAAGAGGTCCGTTCCCGGCTTAATCTTGATGTTACTGTTGCATCCGATTCTCCTCCTGCACCTGCACCAATAGAATCGTTTACTGATATGTGTTTGCACTCAAGTATCATGAAGGATATTGCTTACCATGAATACACCAGGCCAACTTCGATCCAGGCACAAGCCATGCCAATTGCTCTCAGTGGAAGGGATCTATTGGGTTGTGCTGAAACTGGTAGTGGAAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTAGCCCAACCTTCAATTCGGCGCAATGATGGTCCTCTGGCATTAGTTTTGGCTCCTACCAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCCCTCGAGTCATTAAAAACTGCTATTGTTGTGGGCGGAACAAACATTGAAAAACAGAGGGCAGAACTTAGAGCAGGGATTGAAATAGCAGTTGCCACGCCTGGAAGATTCATTGATCACTTGCAACAAGGCAATACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTAGACGAAGCAGATAGAATGCTGGATATGGGTTTTGAACCACAGATAAGAGAGGTAATGAGAAGTCTTCCTGAGAAGCATCAAACATTGCTTTTTAGTGCGACAATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTGGCTAGCCCAGTGCAAGTGAAGGTGGGGAAAGTGAGTAGCCCAACAACTAATGTTTCACAAACGCTTGTGAAAATTTCTGAAAACGAGAAGATTGACCGACTTCTAGACTTACTTGTAGAGGATGCATCACAGGCTGAAAAGTGTGGTCATCCATTTCCATTAACAATTGTGTTTGTTGAGAGGAAGACAAGGTGTGATGAAGTTGCTGAAGCATTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGTCGCAGTCAGAGTGAAAGAGAGGCTGCCTTGCATGATTTTCGGAGTGGCTCTACCAACATTTTGGTTGCCACCGATGTTGCATCTCGTGGCTTGGATGTCACTGGAGTGTCCCATGTCATCAATCTAGATCTTCCCAAGGAAAAGATTATCAGAAAGCGCACAGGTATTTTCCACTATTTGTGGATTGCCTTTCTGCAACTGCTATGTTGGCATCTCATGTGCCTGACCATGGAAGATTATGTGCACCGGATTGGAAGGACGGGGCGTGCAGGATCAACTGGATTAGCTACTTCATTTTACACTGATCGTGACATGTTCCTTGTTGCAAATATAAGGAAGGCAATAGCTGACGCCGAATCTGGGAACACGCTGACATTTGCAACCGGAAAGGTTGCTAGACGGAAGGAGAAAGAAGCTGCAGCTGCACAAAAAGAGGCAAATATTGCTTTATCCAAACAGTTAGGATTGGGAGCTGCTTCAATTAACATCGAAGATAAATATAAATTCATGATTACTGCCGCAAACATTAAAAGAGAGGGCGCAGCAGATAGTGCCTGGGACGATTAA 1812 0.4663 MSYVPPHLRNNGSATVATARTPSVTLDNNNHHHHNHNNHHKLAFTSNNNNNTNANGSPSLPSFHNASRRSSAALPSPRIFATPDPVFPQWQPSERASRMTPEQIEEVRSRLNLDVTVASDSPPAPAPIESFTDMCLHSSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPSIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRAELRAGIEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRSLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTTNVSQTLVKISENEKIDRLLDLLVEDASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKEKIIRKRTGIFHYLWIAFLQLLCWHLMCLTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVANIRKAIADAESGNTLTFATGKVARRKEKEAAAAQKEANIALSKQLGLGAASINIEDKYKFMITAANIKREGAADSAWDD 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01999 603 MobiDBLite consensus disorder prediction 41 72 - -
Vimu2g01999 603 SMART ultradead3 148 351 IPR014001 -
Vimu2g01999 603 MobiDBLite consensus disorder prediction 24 99 - -
Vimu2g01999 603 Pfam Helicase conserved C-terminal domain 360 506 IPR001650 -
Vimu2g01999 603 SMART helicmild6 396 506 IPR001650 -
Vimu2g01999 603 Gene3D - 89 340 IPR027417 -
Vimu2g01999 603 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 160 336 IPR014001 -
Vimu2g01999 603 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 129 157 IPR014014 GO:0003724
Vimu2g01999 603 Coils Coil 215 235 - -
Vimu2g01999 603 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 282 290 IPR000629 -
Vimu2g01999 603 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 479 558 - -
Vimu2g01999 603 Gene3D - 342 565 IPR027417 -
Vimu2g01999 603 Pfam DEAD/DEAH box helicase 153 323 IPR011545 GO:0003676|GO:0005524
Vimu2g01999 603 CDD DEADc 140 337 - -
Vimu2g01999 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 526 IPR027417 -
Vimu2g01999 603 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 360 547 IPR001650 -
Vimu2g01999 603 Coils Coil 547 567 - -
Vimu2g01999 603 CDD SF2_C_DEAD 348 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01999 Vimu-Chr2 14684757 14693072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01999 129 528 Eukaryotic Initiation Factors Gene Family AT1G72730 32.426 5.15e-63 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01999 K12823 - gmx:100818387 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01999 2 14684757 14693072 Vimu2g01999 2 14684757 14693072 ECH