Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01995 ATGTCCCTCCAACCAACCATGAATCTCTCCCACCCCTTCAACCCACCTACCTCAAGCTCTAATTTTTACACCCACCCACCATGCAAAACCCCCCAAAACCCCCAACCACCGCACAAGAAGCTCCTCCGGGTCATCCTCACCGACCACGACGCCACCGACTCCGAATCCTCCGGCGACGACGACGGCCCCAAAAACCCATCTAAACACAAAAAAGTGAAAAGAGAAATCACCCACATCACTATAAACTTTCCCTTTATCCCGGAACCCCCAACGGTAACCCCTTCTTTTTCCACTAACCCCACTCCTTTAACCCGACCCGAGAAGCGGCCCGCCGCCCCACGCCGCCGGAACAAGTTCCGAGGTGTCCGGCAGAGGCCATGGGGACGATGGACAGCCGAGATCCGCGACCCGACCCAAAGAAAACGGGTCTGGCTCGGCACCTTCGACACGGCGGAGGAAGCCGCCGCAGTGTACGACGAGGCCGCTCTGAAGCTCAAGGGACCTGACGCCTTCACCAACTTCCCCCTCGCCGCTACCGGAAAAAGAGAACTCCACGTTTCACCCCCGGAGGCGGCGTGCTCCGGCGACGGTTTCTCGTCGCCGACGTCTGTCCTCACATACTGCGACGGAGACTCCTCGCCGTTCGACGGTTTCCGTTACGGCGAGGTCGATGCATTCGGGTTCGACATCGACGCGCCGTTTAGTCTGACGGATGTTAACATGGGCGTGCTGAATCAGCGCTACGCGAAGGAAGAGTTCGGCGAGTTTGACCCGGACGAGTTCCTGACGTGGCCAAATTAA 801 0.588 MSLQPTMNLSHPFNPPTSSSNFYTHPPCKTPQNPQPPHKKLLRVILTDHDATDSESSGDDDGPKNPSKHKKVKREITHITINFPFIPEPPTVTPSFSTNPTPLTRPEKRPAAPRRRNKFRGVRQRPWGRWTAEIRDPTQRKRVWLGTFDTAEEAAAVYDEAALKLKGPDAFTNFPLAATGKRELHVSPPEAACSGDGFSSPTSVLTYCDGDSSPFDGFRYGEVDAFGFDIDAPFSLTDVNMGVLNQRYAKEEFGEFDPDEFLTWPN 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01995 266 MobiDBLite consensus disorder prediction 1 74 - -
Vimu2g01995 266 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Vimu2g01995 266 SUPERFAMILY DNA-binding domain 118 176 IPR016177 GO:0003677
Vimu2g01995 266 PIRSF PTI6 13 266 IPR017392 GO:0003700
Vimu2g01995 266 MobiDBLite consensus disorder prediction 87 122 - -
Vimu2g01995 266 FunFam Ethylene-responsive transcription factor 2 117 176 - -
Vimu2g01995 266 MobiDBLite consensus disorder prediction 42 68 - -
Vimu2g01995 266 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Vimu2g01995 266 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Vimu2g01995 266 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 39 207 - -
Vimu2g01995 266 Gene3D AP2/ERF domain 117 177 IPR036955 GO:0003700|GO:0006355
Vimu2g01995 266 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
Vimu2g01995 266 CDD AP2 118 175 IPR001471 GO:0003700|GO:0006355
Vimu2g01995 266 MobiDBLite consensus disorder prediction 1 28 - -
Vimu2g01995 266 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01995 Vimu-Chr2 14659922 14661738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01995 40 207 AP2-EREBP Transcription Factor Family AT4G27950 44.086 1.09e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu2g01995 AP2 7.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01995 K13434 - gmx:102660028 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01995 2 14659922 14661738 Vimu2g01995 2 14659922 14661738 ECH
Vimu2g01995 2 14659922 14661738 Vimu1g01247 1 9756645 9757634 PCT