Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01993 ATGGTACCAACACAGGAACATATGATGACTGGCAAAGTTTACTCCATATTGAATTGCCAATATATTATTCCTTCCAAAAAACAACTCGCCATGAAGTTTCCTTCAACTTCAGGCACTTCTTTTCTTTTTGTCATAGTGATTCTTATCCCTTTAGTTATTGCTGATCTAAGTTCAGATAAGCAAGCCCTTCTTGATTTTGCCAATGCTATCCCTCACCGGCGAAACCTTACATGGAATCCAACCACCTCAGTCTGTGAATCATGGGTAGGCATCACTTGCAATGAAGATAGAACTCGTGTTGTTAATGTTCGGCTTCCCGGCGTTGGACTAGTTGGCACCATCCCATCAAATACACTTGGCAAGCTTGATGCTGTGAAAATTATTAGCCTTAGGTCCAACCTACTCAGTGGAAATCTTCCTGCTGACATTGCTTCTCTTCCTTCTCTTCAGTATCTCTATCTCCAGCATAACAACCTTTCTGGTGATATACCTGCATCGTTGTCTCCCCAACTTGTTGTGCTTGATTTGTCATATAATTCCTTCACCGGTGGCATTCCAAAGACATTTCAAAATTTTTCAGAACTAACTAGTTTGAATCTCCAAAACAACTCCCTATCTGGAGAGATACCTAATCTCAATGTCACCCAGCTTAGGCTTTTGAATTTAAGCTACAACCATTTGAATGGCTCTATTCCAAAACCTCTTCAGAGTTTTCCAAATTCTTCCTTTGAAGGAAACTCACTTTTATGTGGACCTCCCCTAAAGCCGTGCTCAGGGGTTCCTCCTAGACCTTCTCCTGCCTTGACTCCACCTCCATCATCAACTCCAGGGAGACAAAACTCAAAATACAAGTTGAGTAAAATAGCTATCATTGCAATTGGTGTTGGAGGAGCTGTGGTGTTATTCTTTATTGTTCTTGTCATTGTTATTTGCTGTGTAAAGAAAGAAGGCGGCAGAGGCTCCAATGTGATTAAAGGAAAGGGTTCTGGTGGTGGCAGGGGTGAGAAGCCAAAAGAAGAGTTTGGGAGTGGGGTTCAAGAACCTGAGAAGAACAAGTTGGTTTTCTTTGAGGGCAGTTCTTATAATTTTGATCTTGAGGATTTGCTGAGAGCTTCAGCTGAAGTCCTGGGAAAGGGTAGTTATGGCACTGCCTATAAGGCCATACTGGAGGAGTCAATGACTGTTGTGGTGAAAAGATTGAAAGAAGTTGTGGTAGGGAAGAAGGACTTTGAACAGCAGATGGAAATTATGGGAAGAGTTGGACAACACACAAATGTTGTCCCCCTTCGCGCTTATTACTATTCAAAAGATGAAAAGCTTCTGGTTTATGACTATATCCTAGGTGGTGGAAGAACAGGTGGAAGAACTCCCTTAGACTGGGAGTCCCGGATAAGAATATCCCTTGGAAGTGCAAAAGGACTTGCTCACATTCATTCTGTTGGTGGTCCCAAATTTTCACATGGAAACATCAAGTCCTCAAATGTTCTTCTCAACCAAGATAATGATGGCTGCATTTCTGATTTTGGCCTTGCCCCTCTTATGAACATTCCTGCTACTCCTTCTAGAGCTGCTGGTTATCGTGCTCCAGAGGTGATTGAAACCCGAAAACACTCTCATAAATCAGATGTGTACAGCTTCGGTGTCCTCCTTCTTGAGATGCTTACTGGGAAGGCTCCTCTGCAATCTCCTGGACGTGATGACATGGTTGATCTCCCTAGGTGGGTTCAGTCTGTTGTTAGGGAAGAATGGACTGCAGAAGTTTTTGATGTTGAGCTTATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAGATGTTGCAAATAGCCATGGCCTGTGTGGCCAAGGTGCCAGATATGAGGCCTAACATGGATGAAGTAGTAAGAATGATCGAAGAGATTCGGCAATCTGACTCAGAGAATCGACCATCTTCTGAAGAAAATAAATCCAAGGACTCAAATGTTTCTCAAACTGTGTTCAAACCTCTGTCCATTTCTTCAATATTTCTCACAGATGTTTTTCTTGTTCTTGAGTTATATTCTCGTGTAGGTGTGCCTATCTTGAGGGTGGCGGTGATCATGGAGGTGCCACCGAGCAATCCGGCGTTGGAGATGGGTCCAAGCAGCCGGAAATCGAGCGGACACATGGCCTTGGGCGTGCCTGACCGCCGCACGAGCTCCACCCTCAATGACATCGATTCCTCCTTTGACCACCTCGACAACGGACGTTACCACCCATATTGGTTTGCATGTTGTGCATGGTCATGCTTTCTTCTTTTCTTCTTCATCATAGTCATTCTCTTTGCATGCATCACCTACTTGGCACTCCTCAAGTCAGGAATGCCAAAAGTTTACGTGAGAGCCTTCAACATTACGCAGTTTCAAGTTGATGAAGGGTCACAAAAGATGAATGCTATTATAGGGTTAAAGCTATTGTTCTCTAACGAGAATGATCAGCTTAAGCTTTTGTATGGACCGCTTTCTATTGTTGCCACAAGTGAAGATATCTTGTTGGGGAAGAACAACGTTGATGCCTTCTCTCAGATGCCCTTGAATGACACCAATTTGGACATGATCATGACAGTGAACAATGATGATGTTAACACATATGCTGCAGATGACTTGAAAGCAGACATCAAATCCAATGAAACGGTGTTTGATGTGTATGCTGGAGGGAACATTGGTTTTAAGGTTGGGAGTTTGGAGATGAACAATGTCCCATTTCTAGCCTCTTGTCATGAAATCAAGATGATGGATGTCGACTTTGGAAAAAGGCCTCCATGTGATGTTAAACTCTTTTATAGAAGGTAA 2808 0.4306 MVPTQEHMMTGKVYSILNCQYIIPSKKQLAMKFPSTSGTSFLFVIVILIPLVIADLSSDKQALLDFANAIPHRRNLTWNPTTSVCESWVGITCNEDRTRVVNVRLPGVGLVGTIPSNTLGKLDAVKIISLRSNLLSGNLPADIASLPSLQYLYLQHNNLSGDIPASLSPQLVVLDLSYNSFTGGIPKTFQNFSELTSLNLQNNSLSGEIPNLNVTQLRLLNLSYNHLNGSIPKPLQSFPNSSFEGNSLLCGPPLKPCSGVPPRPSPALTPPPSSTPGRQNSKYKLSKIAIIAIGVGGAVVLFFIVLVIVICCVKKEGGRGSNVIKGKGSGGGRGEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESMTVVVKRLKEVVVGKKDFEQQMEIMGRVGQHTNVVPLRAYYYSKDEKLLVYDYILGGGRTGGRTPLDWESRIRISLGSAKGLAHIHSVGGPKFSHGNIKSSNVLLNQDNDGCISDFGLAPLMNIPATPSRAAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKVPDMRPNMDEVVRMIEEIRQSDSENRPSSEENKSKDSNVSQTVFKPLSISSIFLTDVFLVLELYSRVGVPILRVAVIMEVPPSNPALEMGPSSRKSSGHMALGVPDRRTSSTLNDIDSSFDHLDNGRYHPYWFACCAWSCFLLFFFIIVILFACITYLALLKSGMPKVYVRAFNITQFQVDEGSQKMNAIIGLKLLFSNENDQLKLLYGPLSIVATSEDILLGKNNVDAFSQMPLNDTNLDMIMTVNNDDVNTYAADDLKADIKSNETVFDVYAGGNIGFKVGSLEMNNVPFLASCHEIKMMDVDFGKRPPCDVKLFYRR 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01993 935 MobiDBLite consensus disorder prediction 331 345 - -
Vimu2g01993 935 Pfam Leucine rich repeat 113 159 IPR001611 GO:0005515
Vimu2g01993 935 Gene3D Ribonuclease Inhibitor 213 258 IPR032675 -
Vimu2g01993 935 SUPERFAMILY Protein kinase-like (PK-like) 374 640 IPR011009 -
Vimu2g01993 935 ProSiteProfiles Protein kinase domain profile. 370 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01993 935 Pfam Leucine Rich Repeat 171 192 IPR001611 GO:0005515
Vimu2g01993 935 Pfam Leucine rich repeat N-terminal domain 57 94 IPR013210 -
Vimu2g01993 935 Gene3D Transferase(Phosphotransferase) domain 1 445 659 - -
Vimu2g01993 935 MobiDBLite consensus disorder prediction 633 652 - -
Vimu2g01993 935 Pfam Protein kinase domain 373 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01993 935 FunFam Leucine-rich repeat receptor-like protein kinase 58 168 - -
Vimu2g01993 935 ProSitePatterns Protein kinases ATP-binding region signature. 376 407 IPR017441 GO:0005524
Vimu2g01993 935 ProSiteProfiles Leucine-rich repeat profile. 194 216 IPR001611 GO:0005515
Vimu2g01993 935 MobiDBLite consensus disorder prediction 260 280 - -
Vimu2g01993 935 MobiDBLite consensus disorder prediction 322 345 - -
Vimu2g01993 935 MobiDBLite consensus disorder prediction 633 648 - -
Vimu2g01993 935 Gene3D Ribonuclease Inhibitor 56 212 IPR032675 -
Vimu2g01993 935 Gene3D Phosphorylase Kinase; domain 1 338 444 - -
Vimu2g01993 935 SUPERFAMILY L domain-like 58 257 - -
Vimu2g01993 935 FunFam Leucine-rich repeat receptor-like protein kinase 169 257 - -
Vimu2g01993 935 PANTHER OS05G0588300 PROTEIN 43 645 - -
Vimu2g01993 935 FunFam pollen receptor-like kinase 1 338 445 - -
Vimu2g01993 935 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 445 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01993 Vimu-Chr2 14649146 14652928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01993 33 654 Receptor kinase-like Gene Family AT5G58300 66.929 0.0 846
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu2g01993 Pkinase 1.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01993 - - gmx:100796171 1078.93