Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01988 ATGGACTTATGTTTATTTGCAGCATCTAAAATCTCTATAAAAATTGATGGTGTAAGGGCCTTTACTTATGGAGAATTGTCCTCCGCCACAAACAATTTCAGCATTTCTGCTCAAGTTGGACAAGGTGGCTATGGGAAGGTTTATAAAGGGACTCTTTCTGATGGCACAGTTGTTGCCATAAAACGCGCACAAGAGGGATCTCTGCAAGGTGAGAAGGAGTTCCTTACAGAAATATCATTACTATCAAGGTTACATCATCGCAACCTTGTTTCTCTGATTGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGTCCAATGGCACATTGAGGGATCACCTTTCTGCGAAAGAACCCCTGACTTTTGCTATGAGATTGAAGATTGCACTAGGGGCAGCTAAAGGCCTCATGTATCTACACACAGAAGCTGATCCTCCAATATTCCATCGAGACGTGAAGGCCAGCAACATATTGTTAGACTCTAAATTTTCGGCAAAAGTGGCTGATTTTGGACTCTCGCGTCTTGCCCCAGTTCCAGATATGGAAGGAGTTGTGCCTGGTCATGTATCTACGGTGGTAAAGGGGACCCCGGGTTACCTTGATCCAGAGTACTTCTTAACTCACAAGTTGACTGACAAGAGTGATGTTTATAGTCTTGGTGTTGTATTTCTGGAACTTTTGACTGGGATGCATCCTATCTCACACGGAAAAAATATTGTTAGAGAGGTTAATATTGCGTACCAATCAGGTGTAATATTTTCAATTATCGATGGACGCATGGGGTCTTATCCATCTGAGCATGTGGAGAAATTTTTGACATTGGCCTTGAAGTGTAGCGAAGATGAGCCAGAGGCACGGCCTAGAATGACAGAAGTGGTTAGAGAGCTTGAAAACATATGGTCTACAATGCCAGAATCAGATACCAAGAAAGCTGAATTTATGTCCAGTGATTCTGGCAAAACTGACATTCACAGTATACCATCTTCATCCTCTGCTTCTGCTATGAAGACTCCTTTTGTATCAGGAGATGTGTCTGGTAGCGACCTTGTTAGTGGAGTAATACCAAGCATCAAGCCAAGATAG 1095 0.4237 MDLCLFAASKISIKIDGVRAFTYGELSSATNNFSISAQVGQGGYGKVYKGTLSDGTVVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMSNGTLRDHLSAKEPLTFAMRLKIALGAAKGLMYLHTEADPPIFHRDVKASNILLDSKFSAKVADFGLSRLAPVPDMEGVVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVNIAYQSGVIFSIIDGRMGSYPSEHVEKFLTLALKCSEDEPEARPRMTEVVRELENIWSTMPESDTKKAEFMSSDSGKTDIHSIPSSSSASAMKTPFVSGDVSGSDLVSGVIPSIKPR 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01988 364 Gene3D Transferase(Phosphotransferase) domain 1 109 326 - -
Vimu2g01988 364 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 322 - -
Vimu2g01988 364 Gene3D Phosphorylase Kinase; domain 1 6 108 - -
Vimu2g01988 364 MobiDBLite consensus disorder prediction 311 364 - -
Vimu2g01988 364 Pfam Protein kinase domain 35 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01988 364 CDD STKc_IRAK 39 303 - -
Vimu2g01988 364 ProSitePatterns Protein kinases ATP-binding region signature. 39 61 IPR017441 GO:0005524
Vimu2g01988 364 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 109 316 - -
Vimu2g01988 364 ProSiteProfiles Protein kinase domain profile. 33 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01988 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Vimu2g01988 364 MobiDBLite consensus disorder prediction 322 344 - -
Vimu2g01988 364 SMART serkin_6 33 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01988 364 SUPERFAMILY Protein kinase-like (PK-like) 18 322 IPR011009 -
Vimu2g01988 364 FunFam Leucine-rich repeat protein kinase family protein 5 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01988 Vimu-Chr2 14557079 14559843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01988 10 313 Receptor kinase-like Gene Family AT5G01950 71.569 1.41e-151 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vimu2g01988 Pkinase 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01988 - - gmx:100799888 644.425