Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu2g01988 | ATGGACTTATGTTTATTTGCAGCATCTAAAATCTCTATAAAAATTGATGGTGTAAGGGCCTTTACTTATGGAGAATTGTCCTCCGCCACAAACAATTTCAGCATTTCTGCTCAAGTTGGACAAGGTGGCTATGGGAAGGTTTATAAAGGGACTCTTTCTGATGGCACAGTTGTTGCCATAAAACGCGCACAAGAGGGATCTCTGCAAGGTGAGAAGGAGTTCCTTACAGAAATATCATTACTATCAAGGTTACATCATCGCAACCTTGTTTCTCTGATTGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGTCCAATGGCACATTGAGGGATCACCTTTCTGCGAAAGAACCCCTGACTTTTGCTATGAGATTGAAGATTGCACTAGGGGCAGCTAAAGGCCTCATGTATCTACACACAGAAGCTGATCCTCCAATATTCCATCGAGACGTGAAGGCCAGCAACATATTGTTAGACTCTAAATTTTCGGCAAAAGTGGCTGATTTTGGACTCTCGCGTCTTGCCCCAGTTCCAGATATGGAAGGAGTTGTGCCTGGTCATGTATCTACGGTGGTAAAGGGGACCCCGGGTTACCTTGATCCAGAGTACTTCTTAACTCACAAGTTGACTGACAAGAGTGATGTTTATAGTCTTGGTGTTGTATTTCTGGAACTTTTGACTGGGATGCATCCTATCTCACACGGAAAAAATATTGTTAGAGAGGTTAATATTGCGTACCAATCAGGTGTAATATTTTCAATTATCGATGGACGCATGGGGTCTTATCCATCTGAGCATGTGGAGAAATTTTTGACATTGGCCTTGAAGTGTAGCGAAGATGAGCCAGAGGCACGGCCTAGAATGACAGAAGTGGTTAGAGAGCTTGAAAACATATGGTCTACAATGCCAGAATCAGATACCAAGAAAGCTGAATTTATGTCCAGTGATTCTGGCAAAACTGACATTCACAGTATACCATCTTCATCCTCTGCTTCTGCTATGAAGACTCCTTTTGTATCAGGAGATGTGTCTGGTAGCGACCTTGTTAGTGGAGTAATACCAAGCATCAAGCCAAGATAG | 1095 | 0.4237 | MDLCLFAASKISIKIDGVRAFTYGELSSATNNFSISAQVGQGGYGKVYKGTLSDGTVVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMSNGTLRDHLSAKEPLTFAMRLKIALGAAKGLMYLHTEADPPIFHRDVKASNILLDSKFSAKVADFGLSRLAPVPDMEGVVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVNIAYQSGVIFSIIDGRMGSYPSEHVEKFLTLALKCSEDEPEARPRMTEVVRELENIWSTMPESDTKKAEFMSSDSGKTDIHSIPSSSSASAMKTPFVSGDVSGSDLVSGVIPSIKPR | 364 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu2g01988 | 364 | Gene3D | Transferase(Phosphotransferase) domain 1 | 109 | 326 | - | - | |
Vimu2g01988 | 364 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED | 15 | 322 | - | - | |
Vimu2g01988 | 364 | Gene3D | Phosphorylase Kinase; domain 1 | 6 | 108 | - | - | |
Vimu2g01988 | 364 | MobiDBLite | consensus disorder prediction | 311 | 364 | - | - | |
Vimu2g01988 | 364 | Pfam | Protein kinase domain | 35 | 298 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu2g01988 | 364 | CDD | STKc_IRAK | 39 | 303 | - | - | |
Vimu2g01988 | 364 | ProSitePatterns | Protein kinases ATP-binding region signature. | 39 | 61 | IPR017441 | GO:0005524 | |
Vimu2g01988 | 364 | FunFam | LRR receptor-like serine/threonine-protein kinase HSL2 | 109 | 316 | - | - | |
Vimu2g01988 | 364 | ProSiteProfiles | Protein kinase domain profile. | 33 | 305 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu2g01988 | 364 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 151 | 163 | IPR008271 | GO:0004672|GO:0006468 | |
Vimu2g01988 | 364 | MobiDBLite | consensus disorder prediction | 322 | 344 | - | - | |
Vimu2g01988 | 364 | SMART | serkin_6 | 33 | 305 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu2g01988 | 364 | SUPERFAMILY | Protein kinase-like (PK-like) | 18 | 322 | IPR011009 | - | |
Vimu2g01988 | 364 | FunFam | Leucine-rich repeat protein kinase family protein | 5 | 108 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu2g01988 | Vimu-Chr2 | 14557079 | 14559843 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu2g01988 | 10 | 313 | Receptor kinase-like Gene Family | AT5G01950 | 71.569 | 1.41e-151 | 449 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-VIII-1 | Vimu2g01988 | Pkinase | 1.9e-48 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu2g01988 | - | - | gmx:100799888 | 644.425 |