Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01987 ATGAGGAGTTGTGTTACCAATTTCTGTAACGGCGAGCGTGTGATGTGGTTCAGGACCGGCGCGTTGTTACCGTCAGATAAAGAACAAGCCGTATCCGAAGTCGCGGTTCTGCCGCGGCGTTCCGGATCCGAAGATCCGAATATACGACGTGGGGATGAAGAAGAAAGGCGTGGACGAGTTTCCCTTCTGCGTGCACCTCGTCTCCTGGGAGAAGGAGAACGTGTCCAGCGAGGCCTTGGAGGCGGCGCGCATCGCCTGCAACAAGTACATGGCGAAGTTTGCGGGGAAGGACGCGTTCCACCTGCGCGTGAGGGTGCACCCCTTCCACGTGCTCCGTATCAACAAGATGCTATCGTGCGCCGGGGCGGACAGGCTCCAGACCGGGATGAGGGGGGCGTTCGGAAAGCCGCAGGGGACGTGCTACTCTCCGTTCGATGTAAGGATGGGAATGGTCAGCACGCTCAGGAGGCTCTTCGCCGAGCCAAGTTCAAGTTCCCTGGCCGTCAGAAGATTATTGTCAGCAGAAAGTGGGGATTTACTAAGCTAAGTCGAAGTGAGTATTTGAAGTTGAAGTCTGAAAACAGAATTGTGCCGGATGGGGTCAATGCCAAGGTTCTTGGGTGTCACGGACCTTTGGCAAATCGTGCGCCCGGAAGAGCTTTCTTACCAGCTACTGCTTAG 681 0.5609 MRSCVTNFCNGERVMWFRTGALLPSDKEQAVSEVAVLPRRSGSEDPNIRRGDEEERRGRVSLLRAPRLLGEGERVQRGLGGGAHRLQQVHGEVCGEGRVPPAREGAPLPRAPYQQDAIVRRGGQAPDRDEGGVRKAAGDVLLSVRCKDGNGQHAQEALRRAKFKFPGRQKIIVSRKWGFTKLSRSEYLKLKSENRIVPDGVNAKVLGCHGPLANRAPGRAFLPATA 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01987 226 PANTHER 60S RIBOSOMAL PROTEIN L10 134 219 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vimu2g01987 226 MobiDBLite consensus disorder prediction 43 57 - -
Vimu2g01987 226 SUPERFAMILY Ribosomal protein L16p/L10e 137 181 IPR036920 GO:0003735|GO:0005840|GO:0006412
Vimu2g01987 226 Gene3D Ribosomal protein L10e/L16 129 185 IPR036920 GO:0003735|GO:0005840|GO:0006412
Vimu2g01987 226 MobiDBLite consensus disorder prediction 38 57 - -
Vimu2g01987 226 FunFam 60S ribosomal protein L10, putative 181 222 - -
Vimu2g01987 226 Gene3D - 186 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01987 Vimu-Chr2 14553927 14555343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01987 134 226 Cytoplasmic Ribosomal Protein Gene Family AT1G26910 78.495 1.88e-47 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01987 K02866 - gmx:100779884 170.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01987 2 14553927 14555343 Vimu2g01987 2 14553927 14555343 ECH