Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01969 ATGGTCAACTACTTTGTGGAGAAAATAAAAAAAGAAAAGAAAGTGGACATTAGTGGAAACCCTAAAGCATTAAGGAGGTTGAGAAGTGCCTGTGAGAGGGCCAAAAGGACACTGTCACATGCTGTCAGTTCCACAATTGAGGTAGATGGTTTATCTAATGGCATTGACTTTTGTTCTTCAATCACTCGTGCAAAATTTGAGGAAATCAACATGGAGATCTTTAACCAATGTATGGAGACAGTAGATAGGTGTCTTTCTGATGCAAATATGGACAAGAGAAGTATGCATGATGTTGTTCTTGTTGGTGGATCTTCTAGGATTCCCAAAGTGCAAGAATTATTGCAAGAATTCTTTGAGGGAAAGGATCTGTGCAAAAGTATAAACCCGGATGAAGCTGTAGCCTGTGGTGCTGCTGTGCAGGCTGCTTTGTTGAGTGTAGGTATTAAGAATGTTCCAGACATGGTGTTGCTTGATGTAACACCTTTATCACTTGGTACTGATGTAATTGGAGATATGATGAGTGTAATGATTCCAAAGAATACTGCTATTCCTGTGAAGAGGACGCAACCATATTTTACAACTGTTGATAACCAATCATCTGTTAAAATAGAGGTTTATGAGGGTGAGAGAACAAGAGCCAGTGATAACAATTTGTTGGGTTCTTTTACACTTTCTGGCCTTCCTCCAGCTCCTATGGGCCATCCTTTTAATGTGTGCTTTGCCATAGATGAAAATGGTATACTATCTGTCTCTGCTAAGGAAAAAAAAACTGGTATCTGCAATAAGATCATCATAAACAATGACATAGGACGACTGTCAACGGAAGAAATCTATAGAATGATTCAAGAAGCAAAGGAATACAAAGTTGAAGATATGAAATTCCTTAGGAAGGCTGAAGCAATGAATGACATTGATTACTATGCTTACAAGATAAAGAAAGCTTTGGAAAAAGAGAATTTCAGTTCAAAACTTTGCTCAGAAGACAGGAAAAAGATCAGTTCTGCAGTAACTAAGGCCACAGAGTTACGTGATGGTGATGAGCAGGAGGAGGAAATAGATGTGTTAGAGGATCATCTGGAAGAACTTATTAACCTCTTTGAAAGCTTTTTTGAAGAGTCTGATTAG 1125 0.3831 MVNYFVEKIKKEKKVDISGNPKALRRLRSACERAKRTLSHAVSSTIEVDGLSNGIDFCSSITRAKFEEINMEIFNQCMETVDRCLSDANMDKRSMHDVVLVGGSSRIPKVQELLQEFFEGKDLCKSINPDEAVACGAAVQAALLSVGIKNVPDMVLLDVTPLSLGTDVIGDMMSVMIPKNTAIPVKRTQPYFTTVDNQSSVKIEVYEGERTRASDNNLLGSFTLSGLPPAPMGHPFNVCFAIDENGILSVSAKEKKTGICNKIIINNDIGRLSTEEIYRMIQEAKEYKVEDMKFLRKAEAMNDIDYYAYKIKKALEKENFSSKLCSEDRKKISSAVTKATELRDGDEQEEEIDVLEDHLEELINLFESFFEESD 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01969 374 Gene3D - 125 142 - -
Vimu2g01969 374 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 299 367 IPR029048 -
Vimu2g01969 374 Gene3D - 77 124 - -
Vimu2g01969 374 PRINTS 70kDa heat shock protein signature 233 249 - -
Vimu2g01969 374 PRINTS 70kDa heat shock protein signature 153 172 - -
Vimu2g01969 374 PRINTS 70kDa heat shock protein signature 127 147 - -
Vimu2g01969 374 PRINTS 70kDa heat shock protein signature 95 111 - -
Vimu2g01969 374 Gene3D - 302 372 IPR029048 -
Vimu2g01969 374 SUPERFAMILY Actin-like ATPase domain 1 144 IPR043129 -
Vimu2g01969 374 FunFam Heat shock 70 kDa protein 148 301 - -
Vimu2g01969 374 Gene3D Actin; Chain A, domain 4 1 76 - -
Vimu2g01969 374 FunFam Heat shock 70 kDa 1 76 - -
Vimu2g01969 374 PANTHER HEAT SHOCK PROTEIN 70KDA 1 338 IPR013126 GO:0005524|GO:0140662
Vimu2g01969 374 Coils Coil 345 365 - -
Vimu2g01969 374 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 149 301 IPR029047 -
Vimu2g01969 374 Pfam Hsp70 protein 1 366 IPR013126 GO:0005524|GO:0140662
Vimu2g01969 374 ProSitePatterns Heat shock hsp70 proteins family signature 3. 98 112 IPR018181 -
Vimu2g01969 374 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 150 304 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01969 Vimu-Chr2 14340417 14341541 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01969 1 365 Calmodulin-binding Proteins AT3G12580 59.401 8.50e-151 438