Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01968 ATGGCGAAAGAAGATCAAGGACTTGCCATAGGAATCGACCTTGGCACAACCTACTCCTGTGTTGCAGTGTGGCGTGAAGATCATTGTCGAGTGGATATCATTCATAACGACCAAGGTCATAACACCACTCCTTCTCTTGTTGCTTTCACAGACCATGAAAGGTTGATAGGTAACGCTGCTAAAAACCAGGCTACCACCAATCCACAAAACACTGTCTTTGATGCCAAGAGATTGATAGGTAGGAAATACAGTGATCCTCTTGTTCAAAAAGATATGATGTTATGGCCATTCAAGGTTGTTGCTGGTGCTAATGACAAACCTATGATCACCCTTAACTATAAGGGTGAGGAGAAACAATTTTGTGCTGAGGAAATTTCATCCATGGTCCTGGTGAAGATGAGAGAGATTGCAGAGGGCTTTTTGGAAACCAGGGTGAAGAATGCGGTGGTTACTGTACCTGCTTATTTCAATGACTCTCAGCGTAAGTCTACCATAGATGCTGGAACCATTGCTGGCCTTAACATCATACGGATAATCAACGAACCAACTGCTGCAGCTATTGCATATTGTTACGTATCCGAGATGGGAACGTAA 594 0.4343 MAKEDQGLAIGIDLGTTYSCVAVWREDHCRVDIIHNDQGHNTTPSLVAFTDHERLIGNAAKNQATTNPQNTVFDAKRLIGRKYSDPLVQKDMMLWPFKVVAGANDKPMITLNYKGEEKQFCAEEISSMVLVKMREIAEGFLETRVKNAVVTVPAYFNDSQRKSTIDAGTIAGLNIIRIINEPTAAAIAYCYVSEMGT 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01968 197 Gene3D - 1 196 - -
Vimu2g01968 197 PANTHER HEAT SHOCK PROTEIN 70KDA 9 190 IPR013126 GO:0005524|GO:0140662
Vimu2g01968 197 SUPERFAMILY Actin-like ATPase domain 9 190 IPR043129 -
Vimu2g01968 197 FunFam Heat shock 70 kDa protein 73 128 - -
Vimu2g01968 197 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vimu2g01968 197 Pfam Hsp70 protein 9 189 IPR013126 GO:0005524|GO:0140662
Vimu2g01968 197 PRINTS 70kDa heat shock protein signature 8 21 - -
Vimu2g01968 197 PRINTS 70kDa heat shock protein signature 148 168 - -
Vimu2g01968 197 PRINTS 70kDa heat shock protein signature 38 50 - -
Vimu2g01968 197 PRINTS 70kDa heat shock protein signature 60 68 - -
Vimu2g01968 197 FunFam Heat shock protein 70 10 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01968 Vimu-Chr2 14333769 14334461 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01968 1 189 Calmodulin-binding Proteins AT3G12580 75.132 4.39e-97 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01968 K03283 - gmx:102667572 324.709