Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01961 ATGGAGACCGTTCCTTCTGTTCTCAAGAGAGAAGTTATTGAGAAAATTATAGAGGGAAGGGATTGTTTGGTAGTCATGGCTACTGGTAGTGGGAAGTCCTTGTGCTATCAGGTACCTCCCTTGGTTGTTAAAAAGACTGGGATAGTTGTGAGCCCTCTGATATCGTTGATGCAAGACCAGGTGATGGCTTTAAAACAACGAGGTATTAGAGCTGAATATCTTGGAAGTGCTCAGAAGGATTTCACTGTGCACTCTAAAGCTGAACGTGGTCAATTTGACATTCTGTTCATGACTCCTGAGAAGGCATGCGCAGTTCCTACCAGTTTTTGGTCCAACTTACTAAAGGCTGGAATTAGTCTTTTTGCTGTTGATGAAGCCCATTGCATATCAGAATGGGGACATGATTTTAGGGTGGAATACAAGCATCTGGACAAGTTACGTGAGGTCTTGCTTGATGTTCCTTTTGTTGGTCTAACGGCGACTGCTACTGAAAAGGTTCGATTTGACATCATCAGTTCCCTGAAGATGGATAACCCTTATGTTACGATTGGTTCATTTGATCGCACAAATCTTTTCTATGGTGTCAAACTATTGAACCGTGGACAATCTTTTATTGATGAGCTTGTGCGGGAAATTACAAAAGAAGTTGCTACTGGTGGTTCAACTATAATTTATTGCACAACAATCAAAGATGTAGAGCAGGTATTGAAGTCATTTACAGAAGCAGGCATTGAGGCAGGAATGTACCATGGCCAAATGAATGGAAAAGCTCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAACTGCAAGTCATGGTGGCCACCATTGCCTTTGGCATGGGCATAGATAAACCTAACATTAGACAAGTGATTCACTATGGTTGCCCTAAAAGTCTAGAATCCTACTACCAGGAAAGTGGACGATGCGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTATTACACAAGAAGTGACTTTGCAAAGGGCGACTTTTACTGTGGAGATGTAAAATCAGAAAAACAAAGAAAAGCTGTTATGGAGTCATTGCTCGCAGCTGAACGCTATTGTGTGCTGACAACTTGCAGAAGAAAGTTCTTGCTTGAATACTTTGGGGAAAAAATTTCAGCTGATAGATGCGGGAACTGTGATAATTGCAAAGTCTCAAAGAAGGAGCGAGACATGTCAAGGGAAGCATTTCTTCTAATGGCTTGCATTCATTCATGCAACGGCAGATGGGGCCTTAATATGCCTATTGATGTCCTGCGCGGGTCTCGAGCCAAGAAAATTCTTGAGGTTCAGTTTGATAAGCTTCCACTTCATGGGCTGGGGAAAAATTATCCAGCAAATTGGTGGAAATCACTTGGGCATCAATTGATTTCTCAAGGTTATCTGAAGGAGACTGTTAGTGACGTATACAGAACTATAAGTGTCAGTTCAAGAGGAGAGCAGTTTTTGGCCTCTTCAAGACCAGATTATCAACCTCCTTTAGTTTTGACATTGACTGCTGAAATGCTTGGAGAAGAAGATAATGGAAACACACAAGACGAATTTAAAGCTTTATCAACTTCTGAATTAGATGGTTTTTCAGAGGCTGAGAGAAAGCTCCATCAAATGCTTTTGGAAGAAAGATTAGAGCTTGCAAGAAGTGTTGGAACAGCTCCATATGCTATCTGTGGAGATCAAACGATCAGGAAAATTGCTTTGACAAGGCCATCTACAAAAGCAAGACTAGCAAACATTAATGGTGTAAATCAGCACCTAGTGATAAAATATGGAGATCATTTTCTTCAAGTTATTCAGAAACTGTCACTAGGACTAAACCTATCATTGGACGGGGAAGAAAGGGTCCCAACGGCTAGTTTGCAAACTAATGCAGTAACGAAAGTGTCTCCACTAACCAACAAATCCAAGAAGTTGACATCAGCGAAGTTTGAAGCATGGAAAATGTGGCATGAAGATGGTCTTTCTATTCATGATATTGCTAACTTAGAAGTTAGATCGGCTCCTATAAAAGAACAAACTGTTGCTGAATATCTACTGGAAGCTGCCCAAGAAGGATTACCTTTTGATTGGGTTAGATTCAGCAAGATGATAGGACTCACTCAAGAGATTATGTCAGAAATTCAGGGTGCTATTTCAAAAGTTGGATCTACAGACAAGCTGAAGCCTATAAAAAATGAATTGCCAGAAGACATAAGTTATCAGCACATCAAGACTTATTTGTCAATGCGAAACTGTGGTATATCCTTGGAAACAAATCAGTCTGGAAGTAACCAAACCGGGAAAGATGATGAACATGCACACAATGCTTCAAATTTGTCAGACTGTACTTTAGAAACATGTCCTGACAGGCAATGTGAAGAAGACACTTCTGTAAAAGGTTTGGCTGAACAACGTGACTTAGAAATTGATGAGGTACCTTCTTTACCTGTCAACGGTTCTGAGGAACAGAAGCTTTCAAATGCCAGGGAAGGGGAATTCACAAGAAAACGACAAAGGGACAGTGAAACGAAGGAAGTAAACTCAACTAGATTGAAGGCTACAGTGACTTCTGTTATAGAGTGGATGAAGAACCTTGATGAAGGGGTAAGTGGAGACTTTTTTATGTTTCTGACGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATATACATATATATATATATATATATAGATTCACAGACACATATATGTGCTTTGCTTTGTGATTATAATTGTAGGAAAATGTGTTGTTTATTTGTTTCAGGCTACGTTGAGCAATATTTTGGAACACTTCAATGGATCCAGTGA 2841 0.3967 METVPSVLKREVIEKIIEGRDCLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKQRGIRAEYLGSAQKDFTVHSKAERGQFDILFMTPEKACAVPTSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKHLDKLREVLLDVPFVGLTATATEKVRFDIISSLKMDNPYVTIGSFDRTNLFYGVKLLNRGQSFIDELVREITKEVATGGSTIIYCTTIKDVEQVLKSFTEAGIEAGMYHGQMNGKAREESHRLFVRDELQVMVATIAFGMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDVKSEKQRKAVMESLLAAERYCVLTTCRRKFLLEYFGEKISADRCGNCDNCKVSKKERDMSREAFLLMACIHSCNGRWGLNMPIDVLRGSRAKKILEVQFDKLPLHGLGKNYPANWWKSLGHQLISQGYLKETVSDVYRTISVSSRGEQFLASSRPDYQPPLVLTLTAEMLGEEDNGNTQDEFKALSTSELDGFSEAERKLHQMLLEERLELARSVGTAPYAICGDQTIRKIALTRPSTKARLANINGVNQHLVIKYGDHFLQVIQKLSLGLNLSLDGEERVPTASLQTNAVTKVSPLTNKSKKLTSAKFEAWKMWHEDGLSIHDIANLEVRSAPIKEQTVAEYLLEAAQEGLPFDWVRFSKMIGLTQEIMSEIQGAISKVGSTDKLKPIKNELPEDISYQHIKTYLSMRNCGISLETNQSGSNQTGKDDEHAHNASNLSDCTLETCPDRQCEEDTSVKGLAEQRDLEIDEVPSLPVNGSEEQKLSNAREGEFTRKRQRDSETKEVNSTRLKATVTSVIEWMKNLDEGVSGDFFMFLTTLSLSLSLSLSLSLYIYIYIYIYIYIYIYIYIYIDSQTHICALLCDYNCRKMCCLFVSGYVEQYFGTLQWIQ 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01961 946 FunFam ATP-dependent DNA helicase 188 389 - -
Vimu2g01961 946 Pfam HRDC domain 536 601 IPR002121 GO:0003676
Vimu2g01961 946 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 204 358 IPR001650 -
Vimu2g01961 946 ProSiteProfiles HRDC domain profile. 531 611 IPR002121 GO:0003676
Vimu2g01961 946 CDD DEXHc_RecQ 10 187 - -
Vimu2g01961 946 PANTHER DNA HELICASE RECQ FAMILY MEMBER 10 677 - -
Vimu2g01961 946 SMART RQC_2 395 499 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vimu2g01961 946 FunFam ATP-dependent DNA helicase 390 514 - -
Vimu2g01961 946 Pfam RQC domain 392 489 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vimu2g01961 946 SMART hrdc7 531 611 IPR002121 GO:0003676
Vimu2g01961 946 MobiDBLite consensus disorder prediction 821 842 - -
Vimu2g01961 946 SUPERFAMILY "Winged helix" DNA-binding domain 386 492 IPR036390 -
Vimu2g01961 946 NCBIfam RecQ family ATP-dependent DNA helicase 9 446 IPR004589 GO:0004386|GO:0006310
Vimu2g01961 946 Gene3D HRDC domain 530 608 IPR044876 -
Vimu2g01961 946 Gene3D - 188 389 IPR027417 -
Vimu2g01961 946 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 328 IPR027417 -
Vimu2g01961 946 Gene3D - 390 513 IPR036388 -
Vimu2g01961 946 FunFam ATP-dependent DNA helicase 5 186 - -
Vimu2g01961 946 Gene3D - 5 186 IPR027417 -
Vimu2g01961 946 SMART ultradead3 1 196 IPR014001 -
Vimu2g01961 946 SMART helicmild6 233 314 IPR001650 -
Vimu2g01961 946 Pfam DEAD/DEAH box helicase 10 166 IPR011545 GO:0003676|GO:0005524
Vimu2g01961 946 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 13 180 IPR014001 -
Vimu2g01961 946 MobiDBLite consensus disorder prediction 813 842 - -
Vimu2g01961 946 Pfam Helicase conserved C-terminal domain 207 313 IPR001650 -
Vimu2g01961 946 Pfam RecQ zinc-binding 333 388 IPR032284 -
Vimu2g01961 946 Pfam Helix-turn-helix domain 647 743 IPR029491 -
Vimu2g01961 946 SUPERFAMILY HRDC-like 530 604 IPR010997 GO:0000166|GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01961 Vimu-Chr2 14284883 14294378 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01961 5 330 Eukaryotic Initiation Factors Gene Family AT3G19760 22.190 3.86e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01961 K03654 - gmx:100797777 1517.29