Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01937 ATGGTGGCACATGCCTGCTGTCACATCACTCCCAACAACGGTCCAGATTTTTCACGTACGGAGGATCCAACGGTTAAGATGGTTTCATCCGCCCATAACACTATAACATGGATTTTCTCTCTCCTAAGCTTTCTCTCTCTACTGCAGCATGTCCAGCTTGGTCGGGACCCCCTTATATATGGCAAAGACTCTTCTTTTATTTTTCTCTCTCTGTCATTTTCTCTCTCCTCTCTCATCACACTCTCTCTGTCTCTGCATTGCTTTCATGGCGATCTCGGGGAACGTGCCACCGTTGCTGCAGTTCACTCCAATTGGATTGTTGGGTTTTATGTGCGCACTCTATGGAGTGAGTGCATTGGCATCATGGTGGAGGACGAGGGTGTTGTTGGGGATGCTTGCTTATGCAATGGCTTGAAGCAAATTGAAGGTAGTGGCTTTGAGCTAGGGTTTCATGTAAAGCTTGATGATATGAAGCTTTCAACATCAGGTTTGGGGCAGCAGGGATTAGAAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGCGCGGGGCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAGAGAAATTGATGGACACATTCCCAATTACCCTAGCTTGCCACCCCAGTTAATTTGTCAACTGCACAATGTTACAATGCATGTGGGTATACTATGTTTTCCTTTTAGTTATGCAGATGTTGAAACGGATGAAGTGTATGCTCAAATGACATTGCAGCCATTGACTCCGCAAGAGCAGAAAGATACATTTCTTCCCATGGAATTGGGCATTCCCAGTAAGCAGCCATCAAATTATTTTTGCAAGACATTAACAGCCAGTGATACCAGTACACATGGAGGATTCTCTGTTCCTCGTCGTGCTGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAGCCACCAGCACAGGAACTGATTGCCAGGGATCTCCATGATGTTGAATGGAAATTTCGGCATATTTTTCGGGGACAGCCGAAACGACACCTTCTTACTACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTCGTGGCTGGAGATTCTGTGCTTTTCATTTGGAATGAGAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAATAGACCACAAACTGTAATGCCATCATCTGTTCTATCCAGTGATAGCATGCACATTGGACTTCTTGCTGCTGCTGCCCATGCTGCAGCAACTAATAGCTGTTTTACCGTGTTTTATAATCCGAGGGCTAGTCCATCTGAGTTCGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGTTTCAGGATGCTTTTCGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGCATAAGTGATTTGGATACTGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTTAAGGTTGGTTGGGATGAATCAACAGCTGGGGAGAGACAACCACGAGTGTCTCTGTGGGAAATTGAGCCATTAACAACATTCCCTATGTACCCGTCATTATTTCCCCTTAGACTGAAACGTCCATGGCATCCTGGCTCCTCATCTCTGCATGATGGTAGAGATGAAGCAAGTAACGGGCTGATGTGGCTGAGGGGTGGAGCTGTAGACCAAGGTCTCAATTCCCTAAATTTTCAAGGAGCTGGTATGTTGCCCTGGATGCAGCAGAGAATGGACCCCACTTTACTAGGAAGTGATCAGAATCAACAGTACCAAGCCATGTTGGCAGCTGGGTTGCAGAATCTAGGTAGTGGATATCTCATGAAGCAACAAATGATGAATTTTCAACAGCCTTTCCACTATCTTCAGCAATCAGGAAACAGCAATTCTCCTTTGCAACTTCAGCCGCAGCAATCAGTTCAACAATCTGTATCTTCTAACATGCTGCAGCCACAGGCCCATGTACTGACAGAGAACCTCTCTCAGCACCTACTTCAGAAACCACACAACAATCAAGAAGTCCAAGCGCAACAGCAGCAGCATTCTTATCAAGAATCACTCTTAATTCCAAGTGACCAGCTTCATCAGAGACAACACTCCGGCGTTCCTTCACCATCGTATTCAAAACCAGATTTCTTGGATTCGAGCATGAAGTTCCCTGTTTCAGTTTCCCCGGGGCAAAACATGCTTAGTTCACTTTGTCCTGAAGGAAATGGAAATCTCTTGAATTTATCAAGGAGTGGTCCATCCTTGCTGAGTGAACAGTTACCTCAACAGCAATGGACTCAAAAGTATGCACCTGTGCAGGTCAATGCTTATGGAAGCACTGTGTCGCAGACACAATATTCTGGAAAAGATTCTGCAATGGTGCTACCACATCTTAACTCAGATGCCCAAAATTCAACTCTATTTGGTGTCAATATTGATTCATCTGGCCTTCTTCTTCCCACCACAGTCCCTGGTTACAGCACCTCATCTGCGGATACTAATTCATCAACAATGCCATTAGGGGAGTCTGGTTTCCAGGGTTCTCTGTTTGGTTGCATGCAAGATTCGTCAGAGTTGTTGCATAGCGCAGGGCATGTTGATCCACAAAACCAGACTCAAACCTTTGTGAAGGTATACAAATCAGGGTCTGTTGGGCGTTCACTTGACATATCCCGGTTCAGCAGCTATCATGAACTGCGTGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGAAAGTTGGAAGACCCTCCTAGATCAGGCTGGCAGCTTGTGTTCGTTGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTCGTCAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGACATTCAGAAAATGGGGGAACAAGCAGTGGAATCCCTTGCTCTAGGTTCAGGACAAAGGCTCAATGGCACTGGTGCTGAGTCTCAGGACATTGTTTCTGGACCACCATCAATTGGCTCACTTGAATACTGA 3027 0.4582 MVAHACCHITPNNGPDFSRTEDPTVKMVSSAHNTITWIFSLLSFLSLLQHVQLGRDPLIYGKDSSFIFLSLSFSLSSLITLSLSLHCFHGDLGERATVAAVHSNWIVGFYVRTLWSECIGIMVEDEGVVGDACLCNGLKQIEGSGFELGFHVKLDDMKLSTSGLGQQGLEGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHVGILCFPFSYADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDTVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSLHDGRDEASNGLMWLRGGAVDQGLNSLNFQGAGMLPWMQQRMDPTLLGSDQNQQYQAMLAAGLQNLGSGYLMKQQMMNFQQPFHYLQQSGNSNSPLQLQPQQSVQQSVSSNMLQPQAHVLTENLSQHLLQKPHNNQEVQAQQQQHSYQESLLIPSDQLHQRQHSGVPSPSYSKPDFLDSSMKFPVSVSPGQNMLSSLCPEGNGNLLNLSRSGPSLLSEQLPQQQWTQKYAPVQVNAYGSTVSQTQYSGKDSAMVLPHLNSDAQNSTLFGVNIDSSGLLLPTTVPGYSTSSADTNSSTMPLGESGFQGSLFGCMQDSSELLHSAGHVDPQNQTQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPPRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLALGSGQRLNGTGAESQDIVSGPPSIGSLEY 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01937 1008 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 172 971 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu2g01937 1008 Gene3D - 878 971 - -
Vimu2g01937 1008 MobiDBLite consensus disorder prediction 986 1000 - -
Vimu2g01937 1008 ProSiteProfiles PB1 domain profile. 882 966 IPR000270 GO:0005515
Vimu2g01937 1008 FunFam Auxin response factor 457 529 - -
Vimu2g01937 1008 Pfam B3 DNA binding domain 293 394 IPR003340 GO:0003677
Vimu2g01937 1008 MobiDBLite consensus disorder prediction 986 1008 - -
Vimu2g01937 1008 Pfam AUX/IAA family 879 966 IPR033389 -
Vimu2g01937 1008 SMART B3_2 293 395 IPR003340 GO:0003677
Vimu2g01937 1008 CDD B3_DNA 292 393 IPR003340 GO:0003677
Vimu2g01937 1008 FunFam Auxin response factor 291 395 - -
Vimu2g01937 1008 ProSiteProfiles B3 DNA-binding domain profile. 293 395 IPR003340 GO:0003677
Vimu2g01937 1008 Gene3D - 457 529 - -
Vimu2g01937 1008 Pfam Auxin response factor 419 502 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu2g01937 1008 SUPERFAMILY CAD & PB1 domains 876 956 - -
Vimu2g01937 1008 Gene3D - 291 394 IPR015300 -
Vimu2g01937 1008 SUPERFAMILY DNA-binding pseudobarrel domain 277 422 IPR015300 -
Vimu2g01937 1008 MobiDBLite consensus disorder prediction 635 660 - -
Vimu2g01937 1008 FunFam Auxin response factor 877 971 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01937 Vimu-Chr2 14104877 14115551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01937 263 974 B3 DNA Binding Superfamily AT5G37020 67.867 0.0 923
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu2g01937 AUX_IAA 3.7e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01937 - - gmx:100784373 1573.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01937 2 14104877 14115551 Vimu2g01937 2 14104877 14115551 ECH
Vimu2g01937 2 14104877 14115551 Vimu1g01196 1 9312385 9314887 PCT