Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01931 ATGCTTAACATTTCCCCATTATCTATATTTCAGTTTATCTGTGGAGAAAATTATTTCACACTTGCATTAAAGAAAAAACCTCTTCGTTCAGGTCATCTCAAAAGGATTTGCGAAACAGATCTGGGGTTGATCTTTCAATGCTGCCTTACAAAACATGTATTCAAGATCAATAAACAATACCTTGCAAATGTGGCACTTAAAATCAATGTCAAGATGGGAGGAAGAAACACAGTGCTTTTGGATGCTTTAAGTTGGAGGATTCCATTGGTCAGTGATATTCCAACAATAATATTTGGAGCTGATGTAACTCATCCAGAATCAGGACATGATTCTTGTCCATCCATTGTTGCTGTTGTAGCCTCCCAGGACTGGCCTGAAGTAAAAAAGTATGCAGGTTTGGTCTGTGCTCAGCCTCATCGAGAAGAACTTATTCAAGATCTTTTCAGATCTGGGAAAGATCCACAGAGGGGTGTAACACATGGTGGTATGATCAGGGAGCTTTTACTATCATTCAAGAAGGCAACGAGACAAAAACCATTGAGAATAATCTTTTACAGGGATGAGGTAAGTGAAGGACAGTTCTACCAGGTTTTGCTATATGAGCTTGATGCCATCTGCAAGGCTTGTGCATCTTTGGAACCTAGTTACCAGCCACCAGTAACATTTGTAGTAGTTCACAAGCGACATCACACAAGACTCTTTGCAAACAATCACGAAGACAGAAATAGTACTGATAAGAGTGGAAATATCTTACCTGGTTAG 762 0.395 MLNISPLSIFQFICGENYFTLALKKKPLRSGHLKRICETDLGLIFQCCLTKHVFKINKQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGHDSCPSIVAVVASQDWPEVKKYAGLVCAQPHREELIQDLFRSGKDPQRGVTHGGMIRELLLSFKKATRQKPLRIIFYRDEVSEGQFYQVLLYELDAICKACASLEPSYQPPVTFVVVHKRHHTRLFANNHEDRNSTDKSGNILPG 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01931 253 SMART Piwi_a_2 9 252 IPR003165 GO:0003676
Vimu2g01931 253 MobiDBLite consensus disorder prediction 234 253 - -
Vimu2g01931 253 ProSiteProfiles Piwi domain profile. 9 253 IPR003165 GO:0003676
Vimu2g01931 253 SUPERFAMILY Ribonuclease H-like 30 253 IPR012337 -
Vimu2g01931 253 Gene3D - 18 82 - -
Vimu2g01931 253 Gene3D - 86 253 IPR036397 GO:0003676
Vimu2g01931 253 Pfam Piwi domain 24 253 IPR003165 GO:0003676
Vimu2g01931 253 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 24 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01931 Vimu-Chr2 14087220 14088717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01931 31 253 Eukaryotic Initiation Factors Gene Family AT5G43810 83.408 6.01e-132 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01931 K11593 - gmx:100810235 421.779