Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01929 ATGAGAGCGCTGGCTTCTTTGACCAGACAACTTTGGCTGGGAACAACAGCAGTTGGAGCCACTGATTTTAATACAACTGCACAGCAAGTGCTGAAGGATCTGCAAATTGCAACCCCCAAAATCATTGGTTTCTTTGCAGCTACCAAGACTCAACTGGCTGGTGCTGCAATCTATGCCATTGCACAGTGTGCTGAAACTGTCTCGGAGAGTGGTTGTCTGGATTGCCTCACAGTTGGATACAACAACATTGAAGTTTGTTTACCCAATACAGAAGGCAGAGCATTTGATGCTGGATGTTTTATGAGATACTCAGAGACAGCCTTTTTTGCTGATAACCAGACAATTGATATCACACCCTTCTTGCAACAAGGGAGTTCAAGCAAAAAGGGAGCCATTATTGGTGGGGTTGTTGGAGGTGTAGCTTTGATTGTGATCCTCCTTGCACTAATTGCCTTGCTAAGATGGTACAAGAAACCCAAGAAGGTTCGAAGAGGTGACATATTGGGAGCAACTGACTTGAAAGGTCCAGTGTCCTACAGGTATAAGGATTTGAAGGCTGCAACAAAAAATTTCAGTGAGGAAAATAAACTGGGAGAAGGAGGTTTTGGAGATGTATACAAGGGCACTTTGAAAAATGGGAAGATAGTTGCAGTGAAGAAATTAATTTTAGGCGCATCAGGGAAGATCGATGATCAATTTGAAAGTGAAGTGAAGCTTATAAGCAATGTTCATCACAGGAATCTGGTTCGACTCCTTGGATGTTGCAGCAAAGGCCAAGAAAGAATCCTTGTTTATGAATACATGGCAAACAAAAGCTTGGATAGATTCTTATTCGGTGAAGTAAAGGATTCCCTCAACTGGAAACAAAGATATGATATAATTTTAGGCACAGCAAAGGGTTTGGCCTATCTGCATGAGGATTTCCACGTTTGCATCATACATAGGGATATAAAGACTAGCAATATCCTCTTGGATGATGAAATGCAACCAAGAATTGCTGATTTTGGGTTGGCAAGACTTCTACCAGAGGACCAATCTCATCTTAGTACAAGATTTGCAGGAACATTAGGATACACAGCACCTGAGTATGCAATCCATGGTCAGTTATCAGAGAAAGCTGATGCCTACAGCTTTGGTGTTGTACTCCTAGAAATCGTAAGTGGCCAAAAGAATAGTGAACTGAGGACAGATGCTAATGGTGAATTCCTCCTTAAAAGGGCATGGAAACTGTACGAGGAAGAGAGGCATTTGGAGTTGGTTGACAAGAAATTGGATGGTGAAGAGTATGACGTAGAAGAAGTGAAGAAAGTGATAGAGATTGCTTTGCTTTGCATTCAAGCATCAGCTGGTGCAAGGCCAACAATGTCTGAAGTAGTAGCCTCACTGAAAGGGAAGAATTCACTGGGGCAAATTAGGCCATCTATGCCTGTATTTGTTGAATCTAACTTCAGGACTCGGCCAGCTGACACCTCTACCTCAACTGCTTCCTCTACATCTAATGCTACTGCTTCCATTTCTATGCTCTCAGCTCGATGA 1536 0.4251 MRALASLTRQLWLGTTAVGATDFNTTAQQVLKDLQIATPKIIGFFAATKTQLAGAAIYAIAQCAETVSESGCLDCLTVGYNNIEVCLPNTEGRAFDAGCFMRYSETAFFADNQTIDITPFLQQGSSSKKGAIIGGVVGGVALIVILLALIALLRWYKKPKKVRRGDILGATDLKGPVSYRYKDLKAATKNFSEENKLGEGGFGDVYKGTLKNGKIVAVKKLILGASGKIDDQFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANKSLDRFLFGEVKDSLNWKQRYDIILGTAKGLAYLHEDFHVCIIHRDIKTSNILLDDEMQPRIADFGLARLLPEDQSHLSTRFAGTLGYTAPEYAIHGQLSEKADAYSFGVVLLEIVSGQKNSELRTDANGEFLLKRAWKLYEEERHLELVDKKLDGEEYDVEEVKKVIEIALLCIQASAGARPTMSEVVASLKGKNSLGQIRPSMPVFVESNFRTRPADTSTSTASSTSNATASISMLSAR 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01929 511 ProSitePatterns Protein kinases ATP-binding region signature. 197 220 IPR017441 GO:0005524
Vimu2g01929 511 MobiDBLite consensus disorder prediction 484 511 - -
Vimu2g01929 511 FunFam Cysteine-rich receptor-like protein kinase 2 268 470 - -
Vimu2g01929 511 SMART serkin_6 191 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01929 511 Pfam Salt stress response/antifungal 21 105 IPR002902 -
Vimu2g01929 511 FunFam Cysteine-rich receptor-like protein kinase 2 10 108 - -
Vimu2g01929 511 Gene3D Transferase(Phosphotransferase) domain 1 268 472 - -
Vimu2g01929 511 Gene3D - 6 108 IPR038408 -
Vimu2g01929 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 312 324 IPR008271 GO:0004672|GO:0006468
Vimu2g01929 511 ProSiteProfiles Gnk2-homologous domain profile. 5 108 IPR002902 -
Vimu2g01929 511 SUPERFAMILY Protein kinase-like (PK-like) 176 481 IPR011009 -
Vimu2g01929 511 Gene3D Phosphorylase Kinase; domain 1 160 267 - -
Vimu2g01929 511 Pfam Protein tyrosine and serine/threonine kinase 194 462 IPR001245 GO:0004672|GO:0006468
Vimu2g01929 511 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 47 499 - -
Vimu2g01929 511 ProSiteProfiles Protein kinase domain profile. 191 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01929 511 FunFam Cysteine-rich receptor-like protein kinase 2 157 267 - -
Vimu2g01929 511 CDD STKc_IRAK 197 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01929 Vimu-Chr2 14078677 14081081 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01929 110 495 Receptor kinase-like Gene Family AT1G56120 47.264 6.88e-108 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu2g01929 PK_Tyr_Ser-Thr 2.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01929 - - vra:106775622 844.343