Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01922 ATGGCGGAAGTGAAGCTTGTAGGATTGAGCTTGTTGTGGTTGTGGTCATGGTGGAGCTTAGAGGGCGTAAAAGGAGACCCTCAACTCTTTCTACTAAAATGGGATTGCAGCGGATTCATTGCACCCAACTTATCCAACTTCAACAAAAACCTTAATGCAACTTTTGCAGATCTACGAGATCAGCTCAGCAACCAAAGGAACCACTTTGCCACTGCACAAGCAACCACCGGATCGGATCCTGTCTATGCTATGTTTCAGTGCAGAAACTACCTCTCCGATACTGACTGCGCCACCTGCTTCGCCGCCGCCGTCACCCAAATTCGCAACTGCTCCGCCGGAGTCAACGGTGCCCGTGTCGTTTATGACGGTTGCTTCCTCAGGTACGAGAGCAACGACTTCTTCGACCAGATCTTTTCTCGCAGCAGCATACTGTGTGGAAATCAGACTGCGGATGGAAGCACTGATTTTGGCGCAGTTGGAGAACAAGTGCTGATAGATCTACGAATAGGAACACCCAAAATCAGAGGCTACTCTGCAGCCACCAAAACAAAAGTGGCTGGTGGTGCAATCTATGCCTTTGCACAATGTGCTGAAACTCTCTCACAAGACACTTGTTTGGATTGTTTGTCAATTGAAGAGAGCAGCGTACAAGGTTGTCTTCCCAGTACTGAAGGTAGAGCATTCGACCCTGGCTGCTTTATGAGATACTCAGAGACACCCTTCTTTGCTGATAACCAAACCATTGACATCACTCCCTTCTTAAAACAAGGAGGAGGAGGTTCAAGAAAAAAGTGGATTCTTATTGGTGGTTGTGTTGGAGGTGCACTTCTTGTTGTGATCCTTATTTCATTATTTCCCTGGCATAAGAGATCTCAGAGTCCCAAGAGAGTTCCCACAAGTAACGTAGTGGGAGCATCTGAGTTGAAAGGTGCAACCAAGTTCAAGTACAGTGAACTGAAAGCTGCAACAAGAAATTTTAGCGAGAAAAACATACTAGGAGAAGGAGGCTTTGGCGCTGTATACAAGGGGACAATGAAGAATGGAAAAGTTGTTGCGGTAAAAAAATTATTTTCAGGAAATTCCAGCGAGATAGATGACAATTTTGAAAGTGAAGTAACGCTTGTAAGTAATGTTCATCACAGAAATCTGGTTCGGCTTCTCGGTTGCTGCAGTAAAGGCCAAGAAAAAATCCTTGTTTATGAATACATGGCAAACAACAGTCTTGACAAATTCTTATTTGGTAACAGAAAAGGTTCACTCAACTGGAAACAACGCTATGAAATAATTTTGGGCACAGCAAGGGGATTGGCCTATCTACATGAAGAATTTTATGTGTCTATCATACATAGAGATATTAAGAGTGGCAATGTCCTCTTGGATGAACAGCTTCAACCCAAAATTTCTGATTTTGGTTTGGTGAAGCTCCTACCAGGGGACCAATCCCATCTCAGAACAAAAGTTGCAGGAACACTGGGATACACAGCACCAGAGTATGTACTCCATGGTCAGTTATCAAAAAAGGCTGATACATACAGCTATGGAATTGTGGTACTTGAAATCATAAGTGGTCAAAGGTGTACTGATGTGAAGAGTGTTGATGGTAGCCATGAATACCTTCTTCGACGAGCATGGGACTTGTATGAGAAAGGCATGGAGTTGGAGTTGGTGGACAAAAGCTTAGGCCCTAATAGCTATGATATAGAAGAAGTGAAAAAAGTTATAGGCATTGCTTTGTTGTGCACTCAACCATCGGCTGGTATGAGACCGGCTATGTCTGAAGTAGTGGTGCTGCTCAGCAGTAATGACTTTCTTGTGCATATGAGACCTTCAATGCCTATCTTTATTGAATCGAATGGAAGACCCCCAAGAGATATCTCTGCCTCGACTGCTTCCTCTGTGTCTAATGCCAGTGCTTCCCATTCTATAGTACCTGCTAGATGA 1941 0.4405 MAEVKLVGLSLLWLWSWWSLEGVKGDPQLFLLKWDCSGFIAPNLSNFNKNLNATFADLRDQLSNQRNHFATAQATTGSDPVYAMFQCRNYLSDTDCATCFAAAVTQIRNCSAGVNGARVVYDGCFLRYESNDFFDQIFSRSSILCGNQTADGSTDFGAVGEQVLIDLRIGTPKIRGYSAATKTKVAGGAIYAFAQCAETLSQDTCLDCLSIEESSVQGCLPSTEGRAFDPGCFMRYSETPFFADNQTIDITPFLKQGGGGSRKKWILIGGCVGGALLVVILISLFPWHKRSQSPKRVPTSNVVGASELKGATKFKYSELKAATRNFSEKNILGEGGFGAVYKGTMKNGKVVAVKKLFSGNSSEIDDNFESEVTLVSNVHHRNLVRLLGCCSKGQEKILVYEYMANNSLDKFLFGNRKGSLNWKQRYEIILGTARGLAYLHEEFYVSIIHRDIKSGNVLLDEQLQPKISDFGLVKLLPGDQSHLRTKVAGTLGYTAPEYVLHGQLSKKADTYSYGIVVLEIISGQRCTDVKSVDGSHEYLLRRAWDLYEKGMELELVDKSLGPNSYDIEEVKKVIGIALLCTQPSAGMRPAMSEVVVLLSSNDFLVHMRPSMPIFIESNGRPPRDISASTASSVSNASASHSIVPAR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01922 646 CDD STKc_IRAK 332 595 - -
Vimu2g01922 646 Coils Coil 48 68 - -
Vimu2g01922 646 ProSiteProfiles Gnk2-homologous domain profile. 138 241 IPR002902 -
Vimu2g01922 646 FunFam Cysteine-rich receptor-like protein kinase 2 140 241 - -
Vimu2g01922 646 FunFam Cysteine-rich receptor-like protein kinase 2 28 133 - -
Vimu2g01922 646 Pfam Protein kinase domain 327 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01922 646 Gene3D Transferase(Phosphotransferase) domain 1 403 606 - -
Vimu2g01922 646 Pfam Salt stress response/antifungal 42 130 IPR002902 -
Vimu2g01922 646 Pfam Salt stress response/antifungal 154 238 IPR002902 -
Vimu2g01922 646 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Vimu2g01922 646 Gene3D Phosphorylase Kinase; domain 1 288 402 - -
Vimu2g01922 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Vimu2g01922 646 Gene3D - 31 133 IPR038408 -
Vimu2g01922 646 Gene3D - 139 241 IPR038408 -
Vimu2g01922 646 FunFam Cysteine-rich receptor-like protein kinase 2 290 402 - -
Vimu2g01922 646 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 82 623 - -
Vimu2g01922 646 ProSitePatterns Protein kinases ATP-binding region signature. 332 355 IPR017441 GO:0005524
Vimu2g01922 646 SMART serkin_6 326 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01922 646 FunFam Cysteine-rich receptor-like protein kinase 2 403 606 - -
Vimu2g01922 646 MobiDBLite consensus disorder prediction 624 646 - -
Vimu2g01922 646 SUPERFAMILY Protein kinase-like (PK-like) 308 598 IPR011009 -
Vimu2g01922 646 ProSiteProfiles Protein kinase domain profile. 326 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01922 Vimu-Chr2 14036559 14039697 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01922 9 641 Receptor kinase-like Gene Family AT1G70520 38.331 3.92e-128 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu2g01922 Pkinase 6.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01922 - - var:108341533 1048.11