Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01921 ATGTTAGGACTACTGAAGCTATTGGCCTTAACTTTGATATGGTGGAGCAGTAGTGTTGTTGAACATGCAGATGCAGCAACACTGAAAACACGTCTAATAAACACTGGGTGCAGCCCATTCAACGCTTCCAACGCGCGCAGCTTCTTAGCAAATGTCAATGATTCATTGTCAGAGATGAGAGCAGAAATTAGCAACCAAAGCAAACTCTTTGGCACATCACAGAAATCAAGGTCAGGGACCCTCACATATACAATGTTTCAATGCAGAAACTATCTCTCCAAAAATGATTGTCTGTCTTGCTTCGACACTGCCTCCACCCAAATCCGCAACTGCTCCAAAGCCAATGGCGCCAGAGTTATCTACAACGATTGCTTCCTCAGGTTCTACCAACAGACCAATGAACTTGGCAGTGGGGTAACGTGTGGGAACACCAGTTTAAAAACCACTCGTGATTTTAAAGTACTTGGACAACAAGCACTCACGGATATTCAAACAGCAACACCTAAAACTAAAGGGTTTTATGCAGCTACCAAGACACAGGTGGATGATGGTTCTTCACTTTATGCCATTGCACAGTGCGTTGAAACTGCCGCAGAAAGTGATTGTTTGAAATGCATGCAAGTTGCATACAACAACTTACAAAGTTGCCTTCCCAACACAGATGGTACAGCATATGATGCAGGCTGTTTTATGAGATACTCCACCACACCTTTCTTTGCTGCTAATCAAACCATTGATATTCGATCCTACTTAAAACAAGCAGGTGACATATTGGGAGCAACTGAGTTAAGAGGACCAGTTAACTACAAATATAACGATTTGAAAGCTGCAACTAAAAATTTCAGTGCTGAAAATAAACTTGGAGAAGGAGGTTTTGGTGCTGTATACAAGGGTACTCTAAAAAATGGAAAAATTGTTGCCATAAAGAAATTAGTGTTGGGAAAATCAAGCAAGATGGAGGATGATTTTGAAGGTGAAGTGAAACTTATAAGCAATGTTCATCATCGGAATCTCGTTAGACTTCTTGGTTGCTGCAGTAAAGGGGAAGAGAGAATTCTTGTATACGAGTACATGGCAAATAGTAGCCTTGACAGATTCTTATTTGGTGCTAAAGGTTCCCTCAATTGGCAACAACGTTATGATATAATTTTGGGCACAGCAAGAGGACTAGCATATTTACATGAAGAGTTCCATGTGTCCATCATACATAGAGATATAAAGACAGGCAATATCTTGCTAGATGATGATCTTCAACCCAAAATTGCTGATTTTGGTTTGGCAAGGCTTCTGCCAGGGGATCGTTCCCATCTCAGCACAAAATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATACACGGTCAATTATCAGAGAAGGCTGATACCTACAGCTATGGTATTGTAGTTTTAGAAATTATAAGTGGTCAAAAGAGTACTGATGTGAAGAATGAGGAGGAATGTCGTGAATACCTTCTTCAACGAGCTTGGAAACTGTATGAGAGAGGCCTGCAGTTGGAGCTTGTGGACGAGGCCATAGACCCTAATGAGTATGATGCAGAAGAAGCATCTGCAGCAAGTAGGCCAACAATGTCTGAAGTAGTAGTGCTACTCAAAAGCAAGAGCTTAATGGAGCACATGCGACCAACTATGCCTGTGTTTGTTGACACCAATATGATAAATAGGGAAGGCAACTCTGCTAGTTCATCTAATGCCACTGTCTCCGTTTCTGTTCTATCAGCTCGATGA 1752 0.4161 MLGLLKLLALTLIWWSSSVVEHADAATLKTRLINTGCSPFNASNARSFLANVNDSLSEMRAEISNQSKLFGTSQKSRSGTLTYTMFQCRNYLSKNDCLSCFDTASTQIRNCSKANGARVIYNDCFLRFYQQTNELGSGVTCGNTSLKTTRDFKVLGQQALTDIQTATPKTKGFYAATKTQVDDGSSLYAIAQCVETAAESDCLKCMQVAYNNLQSCLPNTDGTAYDAGCFMRYSTTPFFAANQTIDIRSYLKQAGDILGATELRGPVNYKYNDLKAATKNFSAENKLGEGGFGAVYKGTLKNGKIVAIKKLVLGKSSKMEDDFEGEVKLISNVHHRNLVRLLGCCSKGEERILVYEYMANSSLDRFLFGAKGSLNWQQRYDIILGTARGLAYLHEEFHVSIIHRDIKTGNILLDDDLQPKIADFGLARLLPGDRSHLSTKFAGTLGYTAPEYAIHGQLSEKADTYSYGIVVLEIISGQKSTDVKNEEECREYLLQRAWKLYERGLQLELVDEAIDPNEYDAEEASAASRPTMSEVVVLLKSKSLMEHMRPTMPVFVDTNMINREGNSASSSNATVSVSVLSAR 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01921 583 ProSiteProfiles Protein kinase domain profile. 281 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01921 583 FunFam Cysteine-rich receptor-like protein kinase 2 249 357 - -
Vimu2g01921 583 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 83 568 - -
Vimu2g01921 583 ProSiteProfiles Gnk2-homologous domain profile. 134 238 IPR002902 -
Vimu2g01921 583 CDD STKc_IRAK 287 540 - -
Vimu2g01921 583 Pfam Salt stress response/antifungal 41 130 IPR002902 -
Vimu2g01921 583 Pfam Salt stress response/antifungal 147 235 IPR002902 -
Vimu2g01921 583 Gene3D - 29 132 IPR038408 -
Vimu2g01921 583 Gene3D - 138 238 IPR038408 -
Vimu2g01921 583 Gene3D Transferase(Phosphotransferase) domain 1 358 555 - -
Vimu2g01921 583 Gene3D Phosphorylase Kinase; domain 1 251 357 - -
Vimu2g01921 583 Pfam Protein kinase domain 282 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01921 583 FunFam Cysteine-rich receptor-like protein kinase 2 136 238 - -
Vimu2g01921 583 ProSitePatterns Protein kinases ATP-binding region signature. 287 310 IPR017441 GO:0005524
Vimu2g01921 583 FunFam Cysteine-rich receptor-like protein kinase 2 358 547 - -
Vimu2g01921 583 ProSiteProfiles Gnk2-homologous domain profile. 30 133 IPR002902 -
Vimu2g01921 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 401 413 IPR008271 GO:0004672|GO:0006468
Vimu2g01921 583 SMART serkin_6 281 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01921 583 SUPERFAMILY Protein kinase-like (PK-like) 269 565 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01921 Vimu-Chr2 14019590 14022703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01921 29 583 Receptor kinase-like Gene Family AT1G70520 34.615 8.74e-115 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu2g01921 Pkinase 6.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01921 - - gmx:112997608 912.524