Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu2g01920 | ATGATGCTACAACTTAAGGTTGTGGCCTTGATTTTGATATGGTGGAGCAGTAATTCTGTCGAAGATGCAGTTGCAGCCCCAGATGCACATTTAGTAAACATAGGGTGCAGCTCGTTCAATGCTTCCGATTTGCGTAGCTTCTTTGCAAATATCAATGAATCCTTTTCAGACATGAGAGAAGAGATTAGGAATCAAAGCAAGCACTTTGGCACAGTACAGAAAGCAAGAGGACAAGTGCTCACATACGCTATGTTTCAGTGCAGAAACTACCTCTCCAAAAATGACTGTCTTTCTTGCTTCAACACTGCCACCACCCAGATCCGCAACTGCTCCAACGGCAACGGTGCCAGAGTCATCTACGATGGCTGCTTCCTCAGATATGAGAGTAACAGGTTCTACGATCAGACCAACGAAATTGGCAGTGGGGTATCATGTGGGAACATAAGTTCAACTGTCACTGATTTTAAAGCAGCTGGACAACAAGCCCTAATGGATCTCCAAACAGCAGTACCCAAAACTAGAGATTTTTATGCAGCTACGAAGACACTGGTGGCTGGTGGTAGTGCAGTTTATGCTGTTGCACAGTGTGTTGAAACTGCCACTGAGATTAATTGTCAGAATTGCATGCAAGTTGGATACAACAACTTACAAAGTTGTCTTCCCAACACAGAGGGTAGAGCCTATGATGCTGGCTGTTTCATGAGATACTCCACCACACCTTTCTTTGCTGATAATCAGACTATTAATATTGCACCCTATTTGAAAAAAGGAAATTCAAGAAAGAAGTGGGAAATTATAGGTGGTGCCACAGGAGGTGTTGTTCTTCTTCTTTTGTTGTTTGGCTGGAGAATGTCAAGAAAAAGAAACCAGATTCCCAGAGGTGACATATTGGGAGCGACTGAGTTGAAAGGTCCAGTTAACTACAAGTATAATGATTTGAAAGCAGCAACGAAAAATTTCAGTGCTGAAAACAAACTTGGAGAAGGAGGTTTTGGTGATGTATACAAGGGTACTCTGAAAAATGGAAAAGTTGTTGCTGTAAAAAAGCTAGTTTTGGGGAAATCAAGCAACATGGAGGATAATTTTGAAGGGGAAGTGAAGCTTATAAGCAATGTTCATCACAGAAATCTCATTCCATTTATATTTTCTCTCTTTCCAACAATCTTACCTTTGAAACAAGCAGGTAACAAAAAGGGTTCCCTCAATTGGAAACAACGCTATGATATAATATTAGGCACAGCAAGAGGACTGGCATATCTGCATGAAGAGTTCCACGTCTCCATCATACATAGAGATATCAAGACTGCTAACATCCTTCTAGATGATGTTTTTCAGCCCAAAATTGCTGATTTTGGATTGGCAAGGCTTCTCCCAGATGATCGTTCTCATCTTAGCACAAAATTTGCAGGAACTTTGGGATACACAGCACCTGAGTATGCAATGCATGGTCAATTATCAGAGAAGGCTGATACCTACAGCTATGGTATTGTAGTCCTAGAAATAGTAAGTGGCCAAAAGAGTACAGATGTGAAGAATGATGAGGATGGTGAATACCTTCTTCGACGAGCATGGAAACTGCATGAGAGAGGCATGTACTTGGACCTGGTAGACAAGGCAATAGACCCTAATGAATATGACGTAGAAGAAGTGAAAAAAATCATAGAAATTGCTTTGTTATGCACTCAGGCTTCAGCTTCAACGAGGCCTACAATGACTGAAGTGGTAATGCTACTGAAAAGCAAGAGCTTATTGGAGCACCTGCGACCAACTATGCCTGTGTTTGTAGAAACAAATATGATCCCTCGGGAAGGCAACTCTACCAGTTCATCTAATGCTACTGCCTCCATTTCTCTTCCCTCAGCTCGATGA | 1869 | 0.4173 | MMLQLKVVALILIWWSSNSVEDAVAAPDAHLVNIGCSSFNASDLRSFFANINESFSDMREEIRNQSKHFGTVQKARGQVLTYAMFQCRNYLSKNDCLSCFNTATTQIRNCSNGNGARVIYDGCFLRYESNRFYDQTNEIGSGVSCGNISSTVTDFKAAGQQALMDLQTAVPKTRDFYAATKTLVAGGSAVYAVAQCVETATEINCQNCMQVGYNNLQSCLPNTEGRAYDAGCFMRYSTTPFFADNQTINIAPYLKKGNSRKKWEIIGGATGGVVLLLLLFGWRMSRKRNQIPRGDILGATELKGPVNYKYNDLKAATKNFSAENKLGEGGFGDVYKGTLKNGKVVAVKKLVLGKSSNMEDNFEGEVKLISNVHHRNLIPFIFSLFPTILPLKQAGNKKGSLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKTANILLDDVFQPKIADFGLARLLPDDRSHLSTKFAGTLGYTAPEYAMHGQLSEKADTYSYGIVVLEIVSGQKSTDVKNDEDGEYLLRRAWKLHERGMYLDLVDKAIDPNEYDVEEVKKIIEIALLCTQASASTRPTMTEVVMLLKSKSLLEHLRPTMPVFVETNMIPREGNSTSSSNATASISLPSAR | 622 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu2g01920 | 622 | FunFam | Cysteine-rich receptor-like protein kinase 2 | 140 | 241 | - | - | |
Vimu2g01920 | 622 | CDD | STKc_IRAK | 326 | 579 | - | - | |
Vimu2g01920 | 622 | FunFam | Cysteine-rich receptor-like protein kinase 2 | 387 | 586 | - | - | |
Vimu2g01920 | 622 | PANTHER | CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 | 82 | 604 | - | - | |
Vimu2g01920 | 622 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 428 | 440 | IPR008271 | GO:0004672|GO:0006468 | |
Vimu2g01920 | 622 | Gene3D | Phosphorylase Kinase; domain 1 | 297 | 384 | - | - | |
Vimu2g01920 | 622 | MobiDBLite | consensus disorder prediction | 601 | 622 | - | - | |
Vimu2g01920 | 622 | ProSiteProfiles | Gnk2-homologous domain profile. | 29 | 132 | IPR002902 | - | |
Vimu2g01920 | 622 | ProSitePatterns | Protein kinases ATP-binding region signature. | 326 | 349 | IPR017441 | GO:0005524 | |
Vimu2g01920 | 622 | Gene3D | - | 28 | 132 | IPR038408 | - | |
Vimu2g01920 | 622 | Gene3D | - | 139 | 241 | IPR038408 | - | |
Vimu2g01920 | 622 | Pfam | Protein kinase domain | 321 | 575 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu2g01920 | 622 | Gene3D | Transferase(Phosphotransferase) domain 1 | 391 | 588 | - | - | |
Vimu2g01920 | 622 | FunFam | Cysteine-rich receptor-like protein kinase 2 | 28 | 132 | - | - | |
Vimu2g01920 | 622 | SUPERFAMILY | Protein kinase-like (PK-like) | 305 | 599 | IPR011009 | - | |
Vimu2g01920 | 622 | Pfam | Salt stress response/antifungal | 150 | 238 | IPR002902 | - | |
Vimu2g01920 | 622 | Pfam | Salt stress response/antifungal | 40 | 129 | IPR002902 | - | |
Vimu2g01920 | 622 | ProSiteProfiles | Gnk2-homologous domain profile. | 136 | 241 | IPR002902 | - | |
Vimu2g01920 | 622 | ProSiteProfiles | Protein kinase domain profile. | 320 | 584 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu2g01920 | 622 | SMART | serkin_6 | 320 | 584 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu2g01920 | Vimu-Chr2 | 14011424 | 14014761 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu2g01920 | 2 | 617 | Receptor kinase-like Gene Family | AT1G70520 | 33.385 | 1.41e-108 | 339 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_DLSV | Vimu2g01920 | Pkinase | 5.3e-38 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu2g01920 | - | - | gmx:100801131 | 922.924 |