Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01920 ATGATGCTACAACTTAAGGTTGTGGCCTTGATTTTGATATGGTGGAGCAGTAATTCTGTCGAAGATGCAGTTGCAGCCCCAGATGCACATTTAGTAAACATAGGGTGCAGCTCGTTCAATGCTTCCGATTTGCGTAGCTTCTTTGCAAATATCAATGAATCCTTTTCAGACATGAGAGAAGAGATTAGGAATCAAAGCAAGCACTTTGGCACAGTACAGAAAGCAAGAGGACAAGTGCTCACATACGCTATGTTTCAGTGCAGAAACTACCTCTCCAAAAATGACTGTCTTTCTTGCTTCAACACTGCCACCACCCAGATCCGCAACTGCTCCAACGGCAACGGTGCCAGAGTCATCTACGATGGCTGCTTCCTCAGATATGAGAGTAACAGGTTCTACGATCAGACCAACGAAATTGGCAGTGGGGTATCATGTGGGAACATAAGTTCAACTGTCACTGATTTTAAAGCAGCTGGACAACAAGCCCTAATGGATCTCCAAACAGCAGTACCCAAAACTAGAGATTTTTATGCAGCTACGAAGACACTGGTGGCTGGTGGTAGTGCAGTTTATGCTGTTGCACAGTGTGTTGAAACTGCCACTGAGATTAATTGTCAGAATTGCATGCAAGTTGGATACAACAACTTACAAAGTTGTCTTCCCAACACAGAGGGTAGAGCCTATGATGCTGGCTGTTTCATGAGATACTCCACCACACCTTTCTTTGCTGATAATCAGACTATTAATATTGCACCCTATTTGAAAAAAGGAAATTCAAGAAAGAAGTGGGAAATTATAGGTGGTGCCACAGGAGGTGTTGTTCTTCTTCTTTTGTTGTTTGGCTGGAGAATGTCAAGAAAAAGAAACCAGATTCCCAGAGGTGACATATTGGGAGCGACTGAGTTGAAAGGTCCAGTTAACTACAAGTATAATGATTTGAAAGCAGCAACGAAAAATTTCAGTGCTGAAAACAAACTTGGAGAAGGAGGTTTTGGTGATGTATACAAGGGTACTCTGAAAAATGGAAAAGTTGTTGCTGTAAAAAAGCTAGTTTTGGGGAAATCAAGCAACATGGAGGATAATTTTGAAGGGGAAGTGAAGCTTATAAGCAATGTTCATCACAGAAATCTCATTCCATTTATATTTTCTCTCTTTCCAACAATCTTACCTTTGAAACAAGCAGGTAACAAAAAGGGTTCCCTCAATTGGAAACAACGCTATGATATAATATTAGGCACAGCAAGAGGACTGGCATATCTGCATGAAGAGTTCCACGTCTCCATCATACATAGAGATATCAAGACTGCTAACATCCTTCTAGATGATGTTTTTCAGCCCAAAATTGCTGATTTTGGATTGGCAAGGCTTCTCCCAGATGATCGTTCTCATCTTAGCACAAAATTTGCAGGAACTTTGGGATACACAGCACCTGAGTATGCAATGCATGGTCAATTATCAGAGAAGGCTGATACCTACAGCTATGGTATTGTAGTCCTAGAAATAGTAAGTGGCCAAAAGAGTACAGATGTGAAGAATGATGAGGATGGTGAATACCTTCTTCGACGAGCATGGAAACTGCATGAGAGAGGCATGTACTTGGACCTGGTAGACAAGGCAATAGACCCTAATGAATATGACGTAGAAGAAGTGAAAAAAATCATAGAAATTGCTTTGTTATGCACTCAGGCTTCAGCTTCAACGAGGCCTACAATGACTGAAGTGGTAATGCTACTGAAAAGCAAGAGCTTATTGGAGCACCTGCGACCAACTATGCCTGTGTTTGTAGAAACAAATATGATCCCTCGGGAAGGCAACTCTACCAGTTCATCTAATGCTACTGCCTCCATTTCTCTTCCCTCAGCTCGATGA 1869 0.4173 MMLQLKVVALILIWWSSNSVEDAVAAPDAHLVNIGCSSFNASDLRSFFANINESFSDMREEIRNQSKHFGTVQKARGQVLTYAMFQCRNYLSKNDCLSCFNTATTQIRNCSNGNGARVIYDGCFLRYESNRFYDQTNEIGSGVSCGNISSTVTDFKAAGQQALMDLQTAVPKTRDFYAATKTLVAGGSAVYAVAQCVETATEINCQNCMQVGYNNLQSCLPNTEGRAYDAGCFMRYSTTPFFADNQTINIAPYLKKGNSRKKWEIIGGATGGVVLLLLLFGWRMSRKRNQIPRGDILGATELKGPVNYKYNDLKAATKNFSAENKLGEGGFGDVYKGTLKNGKVVAVKKLVLGKSSNMEDNFEGEVKLISNVHHRNLIPFIFSLFPTILPLKQAGNKKGSLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKTANILLDDVFQPKIADFGLARLLPDDRSHLSTKFAGTLGYTAPEYAMHGQLSEKADTYSYGIVVLEIVSGQKSTDVKNDEDGEYLLRRAWKLHERGMYLDLVDKAIDPNEYDVEEVKKIIEIALLCTQASASTRPTMTEVVMLLKSKSLLEHLRPTMPVFVETNMIPREGNSTSSSNATASISLPSAR 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01920 622 FunFam Cysteine-rich receptor-like protein kinase 2 140 241 - -
Vimu2g01920 622 CDD STKc_IRAK 326 579 - -
Vimu2g01920 622 FunFam Cysteine-rich receptor-like protein kinase 2 387 586 - -
Vimu2g01920 622 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 82 604 - -
Vimu2g01920 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Vimu2g01920 622 Gene3D Phosphorylase Kinase; domain 1 297 384 - -
Vimu2g01920 622 MobiDBLite consensus disorder prediction 601 622 - -
Vimu2g01920 622 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Vimu2g01920 622 ProSitePatterns Protein kinases ATP-binding region signature. 326 349 IPR017441 GO:0005524
Vimu2g01920 622 Gene3D - 28 132 IPR038408 -
Vimu2g01920 622 Gene3D - 139 241 IPR038408 -
Vimu2g01920 622 Pfam Protein kinase domain 321 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01920 622 Gene3D Transferase(Phosphotransferase) domain 1 391 588 - -
Vimu2g01920 622 FunFam Cysteine-rich receptor-like protein kinase 2 28 132 - -
Vimu2g01920 622 SUPERFAMILY Protein kinase-like (PK-like) 305 599 IPR011009 -
Vimu2g01920 622 Pfam Salt stress response/antifungal 150 238 IPR002902 -
Vimu2g01920 622 Pfam Salt stress response/antifungal 40 129 IPR002902 -
Vimu2g01920 622 ProSiteProfiles Gnk2-homologous domain profile. 136 241 IPR002902 -
Vimu2g01920 622 ProSiteProfiles Protein kinase domain profile. 320 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01920 622 SMART serkin_6 320 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01920 Vimu-Chr2 14011424 14014761 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01920 2 617 Receptor kinase-like Gene Family AT1G70520 33.385 1.41e-108 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu2g01920 Pkinase 5.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01920 - - gmx:100801131 922.924