Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01913 GGATACACAGCACCTGAGTATGCAATCCATGGTCAATTATCAGAGAAGGCTGACACCTACAGCTATGGAATTGTCGTCCTAGAAATCGTTAGTGGTCAAAAGAGTACCGATGTGAAGGGTGACGAGGATGGTCGTGAATACCTACTCCAACGAACATGGAAACTGTATGAGAGAGGAATGCACCTAGAGCTGGTGGACAAGGCCATAGACCCTAATGATTATGATGCAGAAGATGTCAAGAAAATCATAGAAATTGCATTGTTATGCACTCAGGCATCGGCTGCAACGAGACCAACAATGTCTGAAGTAGTAGTGCTACTCAAAAGCAAGAGCTTAGTGGAGAACCTGCGACCAACTATGCCTGTGTTTGTTGAAACGAATATGAAGATTCGGGAAAGCAAGTCTAGCTCAACCAGCGGCTCTTCATCTAATGCCACTGCCTCCATTTCTGTTCTATCAGCACGATGA 468 0.4509 GYTAPEYAIHGQLSEKADTYSYGIVVLEIVSGQKSTDVKGDEDGREYLLQRTWKLYERGMHLELVDKAIDPNDYDAEDVKKIIEIALLCTQASAATRPTMSEVVVLLKSKSLVENLRPTMPVFVETNMKIRESKSSSTSGSSSNATASISVLSAR 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01913 155 ProSiteProfiles Protein kinase domain profile. 1 123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01913 155 MobiDBLite consensus disorder prediction 133 155 - -
Vimu2g01913 155 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 143 - -
Vimu2g01913 155 Pfam Protein tyrosine and serine/threonine kinase 2 105 IPR001245 GO:0004672|GO:0006468
Vimu2g01913 155 SUPERFAMILY Protein kinase-like (PK-like) 1 126 IPR011009 -
Vimu2g01913 155 Gene3D Transferase(Phosphotransferase) domain 1 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01913 Vimu-Chr2 13982516 13983074 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01913 1 115 Receptor kinase-like Gene Family AT1G56120 47.826 2.17e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu2g01913 PK_Tyr_Ser-Thr 5.4e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01913 - - gmx:100778829 238.039