Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01900 ATGGTGAAGAAGAAGAAGACAAGGACCGAGGATACTGAGGACTGGTGTTTTATATGCAAGGATGGAGGATTATTAATGGTCTGTGACCATGGGGGTTGCCGGAAAGCTTATCATCCTCTTTGCGTGGGTAAAGATGATTCCTTTTTGGAGAATGGAAGTGAATGGACTTGTAGTTCACATTTTTGCTCTCTCTGCCATAAAGTGTCCAAGATTAAGTGCTTTTGCTGCCCAACAGCTACTTGTGGGAAATGCTTTTATGATGCTGACTTTGCTATTGTCAAAGGGAACAAAGGATTTTGCAGTCACTGCTTAAAACTTGCTCTTCTAATAGAAGATGATGCTGGTATTGATTCTGATGGGGAATTGGTAGATTTCAAAGATCAAGCTACATATGAATTCTTATTTTCAGAATATTATAAAAGCATCAAAGAAGAAGAAGGGCTGAATTCTAAACATGTACACTCTGCCCATAGATTTTTTAAGAGTGGCAAAAGCAAATGTGACTTGAATCAAGATGAAATAGGTGTAGAGGAAGATAACACTGATAATTCTGAAGACGTGAGTAACTATATGGTTTCTGATTGTGATGACCTGAGTGACACAGCAGGATCAAAGTCAAGGAGGACAAAGAAGGGTATGGGAAAGTTAAAATCAATGAAAGGAAGTGGGAAAGATAAGAAAAAAGAATTTATTGGATGGGGTTCGAAAAGTCTCATAGAATTTCTTGAATGTATAGGCCAAGACACGAGCAATGAATTTTCTGAACAGGATGTCACTTCAATCATTATTAAGTACTGCAGTGAAAACAATCTTTTTGACCCTAAGAAAAAGAGAAAGATACATTGCGATGCGCGGTTGATATCCTTACTGCGGAGGAAATCAGTAAACAAAAACAGGATGCAGAATCTTCTGGCACCACACTTTGCTGCTAATTGTCAAGAAATGGATGATATTAGTAGCAGTTCTAAAGATAGGGATTACAATGAACCATCCAACTTGTCAAGAAAGAGAAAATCGATTTCATGTACAAAATCTCATAATGTAGATATAGTTTCTGAAGGGCATCAAAGCTGTTTTGCAGCCATAGTTAGTTCGAACGTCAAGCTTGTCTACTTGAAGAGGAGTTTAGTGGATGAACTTTCAAAGCAACCTCAAACTTTTGATGGCAAAGTGCTAGGAAGTTTTGTAAGAATCAAAACTGATCCGAATGACTATTTGCAGAAGAATTCACATCTCCTTGTGCAAGTTGTTGGAATAAACAGATCTTTAAACAATGATGAAATCAACAAGGAAATTATGCTTCAACTTTCTAATGTGCCGAAAAATGTACCTATCTCCAAAATTTCAGATGATGACTTTTCTGAGGGTTTTGGTCGTTTCTCGCATCGGATCTTCAGACTCATCTCCGATCTCAAAATGCCCGTTGTTTATGGAGCTCGCTTGACCACCTTCGAAGATTCCGAGAAGGAGAGTGAATACGGTTACGTTCGAGGAATGTCGAGATCTGTATCAGAGAATGAGAAACGGTCTGCTCAAACAGCCTACTGTGGGTTGCAATTTAACATTAAGATGAAACAATTAGCTCAACATGATGATGATGAAGAAATTGGATGGTCAGATCAACAAGTTCTTTCCTTTTTAACTTCTAAGATAAACAAATCTGGGCAAGGAGAGGGCTTAGCCAGTGCTGCTGCTATAAAAATACAAAAAAAGCTGGATCTTGAGCAGAAAGCTAGAAGTCTACATGAAGATATAATAAAGCATTGGATCCCAAGGAAGTTAGTATTATTACAAAACCTGATTGATCGGGCAAATGAAAAGGGATGGAGGAGAGAATATCCTTTCATGATTTACTTTTTTTATTGTTGCCTCAAATTTTCAGTTGTTTTCCGTTTTAATGCTTGA 1905 0.3774 MVKKKKTRTEDTEDWCFICKDGGLLMVCDHGGCRKAYHPLCVGKDDSFLENGSEWTCSSHFCSLCHKVSKIKCFCCPTATCGKCFYDADFAIVKGNKGFCSHCLKLALLIEDDAGIDSDGELVDFKDQATYEFLFSEYYKSIKEEEGLNSKHVHSAHRFFKSGKSKCDLNQDEIGVEEDNTDNSEDVSNYMVSDCDDLSDTAGSKSRRTKKGMGKLKSMKGSGKDKKKEFIGWGSKSLIEFLECIGQDTSNEFSEQDVTSIIIKYCSENNLFDPKKKRKIHCDARLISLLRRKSVNKNRMQNLLAPHFAANCQEMDDISSSSKDRDYNEPSNLSRKRKSISCTKSHNVDIVSEGHQSCFAAIVSSNVKLVYLKRSLVDELSKQPQTFDGKVLGSFVRIKTDPNDYLQKNSHLLVQVVGINRSLNNDEINKEIMLQLSNVPKNVPISKISDDDFSEGFGRFSHRIFRLISDLKMPVVYGARLTTFEDSEKESEYGYVRGMSRSVSENEKRSAQTAYCGLQFNIKMKQLAQHDDDEEIGWSDQQVLSFLTSKINKSGQGEGLASAAAIKIQKKLDLEQKARSLHEDIIKHWIPRKLVLLQNLIDRANEKGWRREYPFMIYFFYCCLKFSVVFRFNA 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01900 634 MobiDBLite consensus disorder prediction 319 338 - -
Vimu2g01900 634 MobiDBLite consensus disorder prediction 319 333 - -
Vimu2g01900 634 SMART PHD_3 15 61 IPR001965 -
Vimu2g01900 634 Gene3D SWIB/MDM2 domain 220 319 IPR036885 -
Vimu2g01900 634 CDD PHD5_NSD 15 60 - -
Vimu2g01900 634 SUPERFAMILY FYVE/PHD zinc finger 10 70 IPR011011 -
Vimu2g01900 634 ProSiteProfiles SWIB/MDM2 domain profile. 230 310 IPR003121 -
Vimu2g01900 634 SUPERFAMILY SWIB/MDM2 domain 222 313 IPR036885 -
Vimu2g01900 634 Gene3D - 363 464 IPR036128 GO:0003677
Vimu2g01900 634 SMART rtf1 361 466 IPR004343 GO:0003677
Vimu2g01900 634 CDD SWIB-MDM2_like 233 308 - -
Vimu2g01900 634 Pfam Plus-3 domain 366 455 IPR004343 GO:0003677
Vimu2g01900 634 Pfam SWIB/MDM2 domain 237 308 IPR003121 -
Vimu2g01900 634 SUPERFAMILY Plus3-like 362 456 IPR036128 GO:0003677
Vimu2g01900 634 ProSiteProfiles Plus3 domain profile. 361 491 IPR004343 GO:0003677
Vimu2g01900 634 PANTHER OS01G0884500 PROTEIN 572 617 IPR045894 -
Vimu2g01900 634 MobiDBLite consensus disorder prediction 198 226 - -
Vimu2g01900 634 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 107 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01900 Vimu-Chr2 13891290 13915938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01900 473 515 Primary Pumps ATPases(2) AT1G78900 53.488 7.92e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vimu2g01900 Plus-3 8.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01900 - - vra:106775779 866.3