Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01886 ATGACCGTACGCCACGTGTCCTCGAAAACTTTCGACGAGAGCCACAAGATTCCTTCGAATTCTCGAGATTTCGGGAAGCAATATCCAACGGTGAAGTCGTGGAAGTTTGCCACTGCGAAGAGGAGCAGAAGATCTAGATCAGTGATTTGGTTTCTGAAGCTATGGCGAATCGAGTATGATCAGAATGGATTTAACAGATCACAGGATGATCCTTCAATAGGAAGTGGTGTATCTTTGAGTTCTGGAGTGCATTCTGCTCCACATATTCAACTTAATGACCAGTTTTCTTGTGGGAGTGACTACGCTCTGAAGGTAAGGAAACCATATACTATCACAAAACAGAGAGAGAGGTGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAGCTGCATGGTCGGGCTTGGCGGCGTATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGCGACCCTACTGGGAATGTTACAAATAGAGCGGAGTCAATTGAAATTCCTCCTCCAAGACCAAAACGAAAGCCAATGCATCCTTACCCTCGTAAACTAGTTGAGACTCCTAATAAAGAAACTTCTTCAATCCCAGAACAACTTATGAAGTCTGGTTCTCTGAAGTCATCAGAGTTTGATCAAGAAAACCAATCTCCGAAATCAGTATTATCAGGAGCTGGTTCAGACATCCTTAGCTCCTCAGATTCAGACACACCAAATGAAAGTTTGTCCCCCATGTCATCCATCAGCGACATCCATACAACATCCGAAGAAGCTGGAATAAACGCTGATTCTTCTCATGATGAGAAATCTCTTATGCTTCCTACAAAGGAAAGTGAAGAATGTTCCGGCCAGACTTTGAAACTCTTTGGGATTACACTTTTTGTAACAGATACATGCAAACCCTCTTCTCCAACAACTGAAGCATGCAAACCAATACCTGTAAACATATGCAAGGGGGATGGAAGATTGGAACTTATTGGGCACATCACACCCAGTGAAACATCAGGCATATCCCTACTAAAGGTGAGAGAGGGTCCTGAAACATGTGGTGGGAAAGGGTTTGTGCCATATAGAAGGTGCATGGCAGGGAGAGAAAACCAGTCTTCATCTGTGACAAATGATAATAGAGAAGAGCAATGCATCCACCTTTCCTTGTAG 1194 0.4313 MTVRHVSSKTFDESHKIPSNSRDFGKQYPTVKSWKFATAKRSRRSRSVIWFLKLWRIEYDQNGFNRSQDDPSIGSGVSLSSGVHSAPHIQLNDQFSCGSDYALKVRKPYTITKQRERWTDEEHKKFLEALKLHGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDPTGNVTNRAESIEIPPPRPKRKPMHPYPRKLVETPNKETSSIPEQLMKSGSLKSSEFDQENQSPKSVLSGAGSDILSSSDSDTPNESLSPMSSISDIHTTSEEAGINADSSHDEKSLMLPTKESEECSGQTLKLFGITLFVTDTCKPSSPTTEACKPIPVNICKGDGRLELIGHITPSETSGISLLKVREGPETCGGKGFVPYRRCMAGRENQSSSVTNDNREEQCIHLSL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01886 397 PANTHER SWI/SNF COMPLEX-RELATED 75 291 - -
Vimu2g01886 397 MobiDBLite consensus disorder prediction 270 289 - -
Vimu2g01886 397 ProSiteProfiles SANT domain profile. 113 164 IPR017884 -
Vimu2g01886 397 SUPERFAMILY Homeodomain-like 109 162 IPR009057 -
Vimu2g01886 397 SMART sant 114 162 IPR001005 -
Vimu2g01886 397 MobiDBLite consensus disorder prediction 273 287 - -
Vimu2g01886 397 MobiDBLite consensus disorder prediction 180 198 - -
Vimu2g01886 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 110 164 IPR017930 -
Vimu2g01886 397 Pfam Myb-like DNA-binding domain 115 158 IPR001005 -
Vimu2g01886 397 MobiDBLite consensus disorder prediction 164 259 - -
Vimu2g01886 397 Gene3D - 117 163 - -
Vimu2g01886 397 FunFam protein REVEILLE 6 isoform X1 117 165 - -
Vimu2g01886 397 NCBIfam myb-like DNA-binding domain, SHAQKYF class 113 162 IPR006447 GO:0003677
Vimu2g01886 397 MobiDBLite consensus disorder prediction 200 259 - -
Vimu2g01886 397 CDD SANT 117 160 IPR001005 -
Vimu2g01886 397 ProSiteProfiles Myb-like domain profile. 110 160 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01886 Vimu-Chr2 13716209 13719238 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu2g01886 Myb_DNA-binding 6.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01886 - - gmx:780539 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01886 2 13716209 13719238 Vimu2g01886 2 13716209 13719238 ECH