Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01885 ATGTCAAAACTAACCCTTCTCTTCTTTCTTCTATTCCCATTCTTCAATTCTTCAACAGTCACCACCAGTTTATACTCTCCTTCACCTCCCGCCGCGCCATTTTCCCAATCTACCCCTGACCCCGACTCCTCTCCGCCGGCCGAGTGGCTCTTCGCCCATGCCACGCACTACGCCGCCACCGATGCTCTTGGCGGCGCGTGCGGCTACGGTGACCTTCCCAACGGCATGGCCACCGCTGCACTCAGCGAAGCCCTCTTCAACCGCGGCCAGATCTGCGGCGCCTGCTTCGAGCTCCGCTGCCACGAGGAGGACGCCGACTTCGACCGCCGCTGGTGCATCTCCGGCGCGTCGGTTACCGTCACCGCCACCAATTTCTGCGCACCGAACTACGGATCCGACGCCGAGAGCCTCAGCGGACACTGTAACCCTCCGAAGCAGCATTTCGTTCTCCCCACGGAAGTTTTCGAGAAAATCGCAATCTGGAAAACTGGCACCGGCAACATGCCTGTGCAGTATCGCAGCAGGATAGAGTGCAGAAGAGAAGGGGGAATGCGGTTCACAATGAGTGGTTCTGGAATCTTCATTTCGGTACTGATTAGTAATGTGGGTGGGATGGGAAACATTGTGGATGTGAAGGTTAAGGGTTCAAAAACTGGTTGGCTTTCAATGGGTAGAAACTGGGGTCAGAACTGGCATGTTAATGCTTTACTGCAGAATCAACCTCTCTCTTTTGAGGTCACTGCTAGTGATGGAATCACTGTTACTTCTTACAATGTTGCTCCCAAGGATTGGACTTTTGGACAATCTTTTCAAGGAAAACAATTTCCCCTTCACAGATAA 840 0.5333 MSKLTLLFFLLFPFFNSSTVTTSLYSPSPPAAPFSQSTPDPDSSPPAEWLFAHATHYAATDALGGACGYGDLPNGMATAALSEALFNRGQICGACFELRCHEEDADFDRRWCISGASVTVTATNFCAPNYGSDAESLSGHCNPPKQHFVLPTEVFEKIAIWKTGTGNMPVQYRSRIECRREGGMRFTMSGSGIFISVLISNVGGMGNIVDVKVKGSKTGWLSMGRNWGQNWHVNALLQNQPLSFEVTASDGITVTSYNVAPKDWTFGQSFQGKQFPLHR 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01885 279 Pfam Expansin C-terminal domain 184 261 IPR007117 -
Vimu2g01885 279 SUPERFAMILY Barwin-like endoglucanases 48 201 IPR036908 -
Vimu2g01885 279 CDD DPBB_EXPA_N 48 178 - -
Vimu2g01885 279 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 183 IPR007112 -
Vimu2g01885 279 PANTHER EXPANSIN-A15 22 275 IPR002963 GO:0009664
Vimu2g01885 279 SMART dpbb_1 78 172 IPR007112 -
Vimu2g01885 279 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 193 272 IPR007117 -
Vimu2g01885 279 PRINTS Expansin signature 73 87 IPR002963 GO:0009664
Vimu2g01885 279 PRINTS Expansin signature 258 274 IPR002963 GO:0009664
Vimu2g01885 279 PRINTS Expansin signature 229 250 IPR002963 GO:0009664
Vimu2g01885 279 PRINTS Expansin signature 194 215 IPR002963 GO:0009664
Vimu2g01885 279 PRINTS Expansin signature 118 128 IPR002963 GO:0009664
Vimu2g01885 279 PRINTS Expansin signature 182 194 IPR002963 GO:0009664
Vimu2g01885 279 SUPERFAMILY PHL pollen allergen 180 271 IPR036749 -
Vimu2g01885 279 Gene3D - 184 275 IPR036749 -
Vimu2g01885 279 Gene3D - 34 179 IPR036908 -
Vimu2g01885 279 PRINTS Expansin/Lol pI family signature 220 234 IPR007118 GO:0005576
Vimu2g01885 279 PRINTS Expansin/Lol pI family signature 48 63 IPR007118 GO:0005576
Vimu2g01885 279 PRINTS Expansin/Lol pI family signature 258 272 IPR007118 GO:0005576
Vimu2g01885 279 PRINTS Expansin/Lol pI family signature 166 182 IPR007118 GO:0005576
Vimu2g01885 279 Pfam Lytic transglycolase 78 172 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01885 Vimu-Chr2 13707586 13710107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01885 48 275 Expansin Gene Family AT3G03220 69.231 5.08e-112 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01885 - - gmx:100790211 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01885 2 13707586 13710107 Vimu2g01885 2 13707586 13710107 ECH
Vimu2g01885 2 13707586 13710107 Vimu1g01169 1 9032616 9034449 PCT