Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01884 ATGACGATGGAAGATGAGTCCTTGGCAACAGTCCCATTTGACAGGGCTATTGAACAGACTCAAAATTTGGTGTGTCTTTCTGTTCAGGCAATTGTGTCAATAAAGAAAGGTGCATATTTACTTAAGTGTGGTCGTAGGGGAAAGCCGAAGCTCTGTCCTTTCAGACTTTCCCAGGATGAGAGAAATTTGATTTGGTATTCAGGACAGCAGGAAAAGCATTTGCGATTGAGTGTAGTTACAAAAATTGTTCAAGGGCAAGAAAATATAAGGTCCCAGAGGCAAAATGAACCCGAAAAGGAGTGCCATTCATTTTCACTAATATATGCTAATGGTGAACGTTCCCTTGATCTGATATGCAAGGACAAGGCACAAGCTGCTTCTTGGTTTGTTGGCTTGAAAGCTGTCATCTCTAGGTGTCAGCATCCTAGAGCTTTTAGTAGTTTAAGAAGTTGCAAAGGTGTGCAGAGTTGTGTTAGTAGTCCTGCTGGGATCTTACGAAGAAAGAAAAATCTAGGCCTTTTGGATGATACCTCTCAGTTTACTCAGGTACACAGCTTATGTGCAAGTCCTACTTTGTCACTTTCCGAAAGGTGCTTTTCTGATGGCTTGTCATGCACTTCTGATAACCTATATTCATCGACATCTTTCCTCTCCAGCGCTCATGGTGTAACGGAGAATTCAGTGCCAAGTTCTCCATACATTGATCCAGAGGTTCATAGTAACATTGAATCAACTCGAACTGATAAGGAGCACAAGAAGAATTTGTCCTATAGGCATTTGACGCATTCTACCTCCGTACATTTAGGAAAAAGTAATGTATTGAAGGATGTAATGATATGGGGTGGAGGGATTGGGTGTCTTGTAGGGATTGTGAATGAAAGGTTTGTTCAAGGTGGGGTCTATTCTTTAGTGCCGAAGTTACTAGAATCAACTGCAATGTTAGATGTACAGAACATAGCTTTGGGAGGAAAACATGCTGCCTTAGTTACAAAACAAGGGGAAGTTTTTTGTTGGGGTCAAGGAAAATGGGGAAGGCTCGGGCAGAAAATTGATATGGACATTAGCTCCCCAAAAATAGTGGATTCTCTTAATGGTCTTCATGTAAAGCATGTTGCTTGTGGTGAATATCATACATGTGCTCTGACAGATTCTGGTGAAGTATATACTTGGGGAAATGATGTCTGCAGTGCAGATTTATTTAATGAAGGGAGAACTAGAAGTCAGTGGATACCTCAAAATCTTGGCGGATCCTTAGATGGTATTAGTATCTCGAGTATTGCTTGTGGAGAATGGCATACTGCGATTGTCTCAAGTTGTGGGAGGTTATTTACTTACGGAGATGGTACATTTGGGGTTCTTGGCCATGGCGATCTTCGGAGCTATTCAAGTCCAAAAGAAGTCGAGTCTCTTAGTGGACTAAGGGTGAGGTCTGTTGCATGTGGATCATGGCATACATCTGCTATTGTTGAAGTTATGATTGATCGTTTTAGGTACAATAGTGCTAGTGGTAAGTTGTTTACATGGGGTGATGGAGATGAGGGGAGGCTTGGTCATTCAGATAACGGAAGCAAGCTTGTACCAACATGTGTTACACAACTTGTCGACTATGATTTTGTTCAAGTGTCATGTGGAAGAATGTTGACTGTAGCACTCACTAACATGGGAAAGGTTTTTGTAATGGGAAGTGCCAAATATGGACAGTTAGGAAATCCACATGCAAAGGATAAAGCAGTCATGGTTGAAGGACAACTCAAACAAGAGTTTGTTAAAGTTATATCAACCGGTTCATATCATGTTGCTGTTTTGACTTCTGCAGGGAGTGTTTATACATGGGGCAGGGGTGAAAGTGGCCAACTGGGGTTAGGTGATACTGAAGATAGATATACACCTTGTTTGGTTGAGGCTCTGAGAGATAGACAGGTAAATAATATCACTTGTGGTCCAAGCTTCACAGCTGCAATCTGTTTACACAAACCTATTTCTATTAGTGACCAATCAACTTGTAGTGGTTGTAGGTTGCCATTTGGGTTCACAAGGAAGAAGCATAACTGCTATAACTGTGGTCTTTTGTTCTGCCGTGCTTGTAGTAGTAAGAAGATTATAAATGCACCTCTAGCCCCCAGTAAGAGCAAGGCTTTTAGGGTTTGTGATCAGTGTTTTGATAAACGACAGGGAGGTACACATTCAATAATGGCATCTAAGTCCAGAAATTACAACAGTCAACAGTTGTTGAAGCATCAACAAAAAATTGTTGATGTCACTGAAGACAGGGGAGAGACAACCGTGACACAAGGTCCTCTGCTATCTTTTGGTCAATCATGTTACAGGAAAAGTATGCCTAGTGGACGTAAGGATTGGAAAAACCACCCAGAAAGCCAACAGGATGTAGAAGATAGTTCTTCTATGCTAGGTGGAATGCCGCAGTGGGGGCAAGTTCCATGTCCTCCCATATTTAAAATTAATGGTACAGAAAATCCAGTTGTTCATATTTCTTCATCCAAAAATAAATTAGCCACAGTTTCTCCTTTTAGTATGGAATCTACAACATATAACTTCTCTAATGTAGAGACAGATACAACTAAATCTGAGAAGATGCTGCTTGAAGAAGTTCATAGGCTGAGAACCGAGGCTAAGAGACTTGAAGAGCAATGTGAGCTTAAAAATCATAAAATACAAGAGTGTCAACAAAAAATTGAGGAGAGTTGGTTTGTGGCAAGGGAGGAAGCTGCTAAATGCAAGGCAGCAAAAGAGGTCATAAAAGCTTTAGCACTAAGGCTTCATACAATATCAGGCAAAGATAACGCCGGGCAAGAAGCAAAAGTTGGACAACATGAATTTGTGCCTAATCTGGCAACCATAGTTACAGATATGAAGAGTCCAAGAGATTACAGTGGGGACAGTCTATCGAATTCTCCTATAGTATTCTCTAACACAATAAAATCCAAATTTGGGAGAAGCATGTTTCCCAAAAATGAAAATTCTAACTTTAGTAGTGGTGAGTCTCAACAAGACAATATCAATGGATTGAAGGCTGACTGGGTAGAACAATATGAGCCAGGTGTTTACATCACATTTACAACCTTACCATGTGGGAAAAAAGGCCTTAAGCGAGTGAGATTTAGTCGCAAGCGATTCTCAGAGAAGGAAGCGGAAAAATGGTGGGAAGAGAATCAGAGCACGGTGTATCACAAGTATGGGATTGAAGGATATATAAACACCAGCCAAAGTCAGGTGAAAGGCTAA 3243 0.4092 MTMEDESLATVPFDRAIEQTQNLVCLSVQAIVSIKKGAYLLKCGRRGKPKLCPFRLSQDERNLIWYSGQQEKHLRLSVVTKIVQGQENIRSQRQNEPEKECHSFSLIYANGERSLDLICKDKAQAASWFVGLKAVISRCQHPRAFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDTSQFTQVHSLCASPTLSLSERCFSDGLSCTSDNLYSSTSFLSSAHGVTENSVPSSPYIDPEVHSNIESTRTDKEHKKNLSYRHLTHSTSVHLGKSNVLKDVMIWGGGIGCLVGIVNERFVQGGVYSLVPKLLESTAMLDVQNIALGGKHAALVTKQGEVFCWGQGKWGRLGQKIDMDISSPKIVDSLNGLHVKHVACGEYHTCALTDSGEVYTWGNDVCSADLFNEGRTRSQWIPQNLGGSLDGISISSIACGEWHTAIVSSCGRLFTYGDGTFGVLGHGDLRSYSSPKEVESLSGLRVRSVACGSWHTSAIVEVMIDRFRYNSASGKLFTWGDGDEGRLGHSDNGSKLVPTCVTQLVDYDFVQVSCGRMLTVALTNMGKVFVMGSAKYGQLGNPHAKDKAVMVEGQLKQEFVKVISTGSYHVAVLTSAGSVYTWGRGESGQLGLGDTEDRYTPCLVEALRDRQVNNITCGPSFTAAICLHKPISISDQSTCSGCRLPFGFTRKKHNCYNCGLLFCRACSSKKIINAPLAPSKSKAFRVCDQCFDKRQGGTHSIMASKSRNYNSQQLLKHQQKIVDVTEDRGETTVTQGPLLSFGQSCYRKSMPSGRKDWKNHPESQQDVEDSSSMLGGMPQWGQVPCPPIFKINGTENPVVHISSSKNKLATVSPFSMESTTYNFSNVETDTTKSEKMLLEEVHRLRTEAKRLEEQCELKNHKIQECQQKIEESWFVAREEAAKCKAAKEVIKALALRLHTISGKDNAGQEAKVGQHEFVPNLATIVTDMKSPRDYSGDSLSNSPIVFSNTIKSKFGRSMFPKNENSNFSSGESQQDNINGLKADWVEQYEPGVYITFTTLPCGKKGLKRVRFSRKRFSEKEAEKWWEENQSTVYHKYGIEGYINTSQSQVKG 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01884 1080 CDD PH_PLC_plant-like 29 137 - -
Vimu2g01884 1080 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 734 IPR013083 -
Vimu2g01884 1080 Gene3D - 499 663 IPR009091 -
Vimu2g01884 1080 Coils Coil 863 897 - -
Vimu2g01884 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 385 439 IPR000408 -
Vimu2g01884 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 333 384 IPR000408 -
Vimu2g01884 1080 Pfam FYVE zinc finger 664 722 IPR000306 GO:0046872
Vimu2g01884 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 555 605 IPR000408 -
Vimu2g01884 1080 SMART fyve_4 656 725 IPR000306 GO:0046872
Vimu2g01884 1080 SUPERFAMILY PH domain-like 28 136 - -
Vimu2g01884 1080 MobiDBLite consensus disorder prediction 780 794 - -
Vimu2g01884 1080 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 662 724 IPR017455 -
Vimu2g01884 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 440 491 IPR000408 -
Vimu2g01884 1080 MobiDBLite consensus disorder prediction 780 803 - -
Vimu2g01884 1080 Pfam Transcription factor regulating root and shoot growth via Pin3 1011 1065 IPR013591 -
Vimu2g01884 1080 Pfam Pleckstrin homology domain 31 134 IPR001849 -
Vimu2g01884 1080 PRINTS Chromosome condensation regulator RCC1 signature 385 401 IPR000408 -
Vimu2g01884 1080 PRINTS Chromosome condensation regulator RCC1 signature 316 329 IPR000408 -
Vimu2g01884 1080 PRINTS Chromosome condensation regulator RCC1 signature 601 622 IPR000408 -
Vimu2g01884 1080 PRINTS Chromosome condensation regulator RCC1 signature 426 442 IPR000408 -
Vimu2g01884 1080 PRINTS Chromosome condensation regulator RCC1 signature 544 562 IPR000408 -
Vimu2g01884 1080 PRINTS Chromosome condensation regulator RCC1 signature 442 456 IPR000408 -
Vimu2g01884 1080 PRINTS Chromosome condensation regulator RCC1 signature 335 351 IPR000408 -
Vimu2g01884 1080 SUPERFAMILY RCC1/BLIP-II 275 658 IPR009091 -
Vimu2g01884 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 502 551 IPR000408 -
Vimu2g01884 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 440 488 IPR000408 -
Vimu2g01884 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 606 654 IPR000408 -
Vimu2g01884 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 333 381 IPR000408 -
Vimu2g01884 1080 Gene3D - 399 491 IPR009091 -
Vimu2g01884 1080 Gene3D - 238 398 IPR009091 -
Vimu2g01884 1080 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 71 925 - -
Vimu2g01884 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 606 657 IPR000408 -
Vimu2g01884 1080 Gene3D - 26 143 IPR011993 -
Vimu2g01884 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 503 554 IPR000408 -
Vimu2g01884 1080 ProSiteProfiles BRX domain profile. 1011 1066 IPR013591 -
Vimu2g01884 1080 SUPERFAMILY FYVE/PHD zinc finger 663 736 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01884 Vimu-Chr2 13689847 13697008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01884 1012 1070 Major Intrinsic Protein MIP AT1G31880 44.068 6.73e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01884 - - gmx:100797223 1971.82