Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu2g01884 | ATGACGATGGAAGATGAGTCCTTGGCAACAGTCCCATTTGACAGGGCTATTGAACAGACTCAAAATTTGGTGTGTCTTTCTGTTCAGGCAATTGTGTCAATAAAGAAAGGTGCATATTTACTTAAGTGTGGTCGTAGGGGAAAGCCGAAGCTCTGTCCTTTCAGACTTTCCCAGGATGAGAGAAATTTGATTTGGTATTCAGGACAGCAGGAAAAGCATTTGCGATTGAGTGTAGTTACAAAAATTGTTCAAGGGCAAGAAAATATAAGGTCCCAGAGGCAAAATGAACCCGAAAAGGAGTGCCATTCATTTTCACTAATATATGCTAATGGTGAACGTTCCCTTGATCTGATATGCAAGGACAAGGCACAAGCTGCTTCTTGGTTTGTTGGCTTGAAAGCTGTCATCTCTAGGTGTCAGCATCCTAGAGCTTTTAGTAGTTTAAGAAGTTGCAAAGGTGTGCAGAGTTGTGTTAGTAGTCCTGCTGGGATCTTACGAAGAAAGAAAAATCTAGGCCTTTTGGATGATACCTCTCAGTTTACTCAGGTACACAGCTTATGTGCAAGTCCTACTTTGTCACTTTCCGAAAGGTGCTTTTCTGATGGCTTGTCATGCACTTCTGATAACCTATATTCATCGACATCTTTCCTCTCCAGCGCTCATGGTGTAACGGAGAATTCAGTGCCAAGTTCTCCATACATTGATCCAGAGGTTCATAGTAACATTGAATCAACTCGAACTGATAAGGAGCACAAGAAGAATTTGTCCTATAGGCATTTGACGCATTCTACCTCCGTACATTTAGGAAAAAGTAATGTATTGAAGGATGTAATGATATGGGGTGGAGGGATTGGGTGTCTTGTAGGGATTGTGAATGAAAGGTTTGTTCAAGGTGGGGTCTATTCTTTAGTGCCGAAGTTACTAGAATCAACTGCAATGTTAGATGTACAGAACATAGCTTTGGGAGGAAAACATGCTGCCTTAGTTACAAAACAAGGGGAAGTTTTTTGTTGGGGTCAAGGAAAATGGGGAAGGCTCGGGCAGAAAATTGATATGGACATTAGCTCCCCAAAAATAGTGGATTCTCTTAATGGTCTTCATGTAAAGCATGTTGCTTGTGGTGAATATCATACATGTGCTCTGACAGATTCTGGTGAAGTATATACTTGGGGAAATGATGTCTGCAGTGCAGATTTATTTAATGAAGGGAGAACTAGAAGTCAGTGGATACCTCAAAATCTTGGCGGATCCTTAGATGGTATTAGTATCTCGAGTATTGCTTGTGGAGAATGGCATACTGCGATTGTCTCAAGTTGTGGGAGGTTATTTACTTACGGAGATGGTACATTTGGGGTTCTTGGCCATGGCGATCTTCGGAGCTATTCAAGTCCAAAAGAAGTCGAGTCTCTTAGTGGACTAAGGGTGAGGTCTGTTGCATGTGGATCATGGCATACATCTGCTATTGTTGAAGTTATGATTGATCGTTTTAGGTACAATAGTGCTAGTGGTAAGTTGTTTACATGGGGTGATGGAGATGAGGGGAGGCTTGGTCATTCAGATAACGGAAGCAAGCTTGTACCAACATGTGTTACACAACTTGTCGACTATGATTTTGTTCAAGTGTCATGTGGAAGAATGTTGACTGTAGCACTCACTAACATGGGAAAGGTTTTTGTAATGGGAAGTGCCAAATATGGACAGTTAGGAAATCCACATGCAAAGGATAAAGCAGTCATGGTTGAAGGACAACTCAAACAAGAGTTTGTTAAAGTTATATCAACCGGTTCATATCATGTTGCTGTTTTGACTTCTGCAGGGAGTGTTTATACATGGGGCAGGGGTGAAAGTGGCCAACTGGGGTTAGGTGATACTGAAGATAGATATACACCTTGTTTGGTTGAGGCTCTGAGAGATAGACAGGTAAATAATATCACTTGTGGTCCAAGCTTCACAGCTGCAATCTGTTTACACAAACCTATTTCTATTAGTGACCAATCAACTTGTAGTGGTTGTAGGTTGCCATTTGGGTTCACAAGGAAGAAGCATAACTGCTATAACTGTGGTCTTTTGTTCTGCCGTGCTTGTAGTAGTAAGAAGATTATAAATGCACCTCTAGCCCCCAGTAAGAGCAAGGCTTTTAGGGTTTGTGATCAGTGTTTTGATAAACGACAGGGAGGTACACATTCAATAATGGCATCTAAGTCCAGAAATTACAACAGTCAACAGTTGTTGAAGCATCAACAAAAAATTGTTGATGTCACTGAAGACAGGGGAGAGACAACCGTGACACAAGGTCCTCTGCTATCTTTTGGTCAATCATGTTACAGGAAAAGTATGCCTAGTGGACGTAAGGATTGGAAAAACCACCCAGAAAGCCAACAGGATGTAGAAGATAGTTCTTCTATGCTAGGTGGAATGCCGCAGTGGGGGCAAGTTCCATGTCCTCCCATATTTAAAATTAATGGTACAGAAAATCCAGTTGTTCATATTTCTTCATCCAAAAATAAATTAGCCACAGTTTCTCCTTTTAGTATGGAATCTACAACATATAACTTCTCTAATGTAGAGACAGATACAACTAAATCTGAGAAGATGCTGCTTGAAGAAGTTCATAGGCTGAGAACCGAGGCTAAGAGACTTGAAGAGCAATGTGAGCTTAAAAATCATAAAATACAAGAGTGTCAACAAAAAATTGAGGAGAGTTGGTTTGTGGCAAGGGAGGAAGCTGCTAAATGCAAGGCAGCAAAAGAGGTCATAAAAGCTTTAGCACTAAGGCTTCATACAATATCAGGCAAAGATAACGCCGGGCAAGAAGCAAAAGTTGGACAACATGAATTTGTGCCTAATCTGGCAACCATAGTTACAGATATGAAGAGTCCAAGAGATTACAGTGGGGACAGTCTATCGAATTCTCCTATAGTATTCTCTAACACAATAAAATCCAAATTTGGGAGAAGCATGTTTCCCAAAAATGAAAATTCTAACTTTAGTAGTGGTGAGTCTCAACAAGACAATATCAATGGATTGAAGGCTGACTGGGTAGAACAATATGAGCCAGGTGTTTACATCACATTTACAACCTTACCATGTGGGAAAAAAGGCCTTAAGCGAGTGAGATTTAGTCGCAAGCGATTCTCAGAGAAGGAAGCGGAAAAATGGTGGGAAGAGAATCAGAGCACGGTGTATCACAAGTATGGGATTGAAGGATATATAAACACCAGCCAAAGTCAGGTGAAAGGCTAA | 3243 | 0.4092 | MTMEDESLATVPFDRAIEQTQNLVCLSVQAIVSIKKGAYLLKCGRRGKPKLCPFRLSQDERNLIWYSGQQEKHLRLSVVTKIVQGQENIRSQRQNEPEKECHSFSLIYANGERSLDLICKDKAQAASWFVGLKAVISRCQHPRAFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDTSQFTQVHSLCASPTLSLSERCFSDGLSCTSDNLYSSTSFLSSAHGVTENSVPSSPYIDPEVHSNIESTRTDKEHKKNLSYRHLTHSTSVHLGKSNVLKDVMIWGGGIGCLVGIVNERFVQGGVYSLVPKLLESTAMLDVQNIALGGKHAALVTKQGEVFCWGQGKWGRLGQKIDMDISSPKIVDSLNGLHVKHVACGEYHTCALTDSGEVYTWGNDVCSADLFNEGRTRSQWIPQNLGGSLDGISISSIACGEWHTAIVSSCGRLFTYGDGTFGVLGHGDLRSYSSPKEVESLSGLRVRSVACGSWHTSAIVEVMIDRFRYNSASGKLFTWGDGDEGRLGHSDNGSKLVPTCVTQLVDYDFVQVSCGRMLTVALTNMGKVFVMGSAKYGQLGNPHAKDKAVMVEGQLKQEFVKVISTGSYHVAVLTSAGSVYTWGRGESGQLGLGDTEDRYTPCLVEALRDRQVNNITCGPSFTAAICLHKPISISDQSTCSGCRLPFGFTRKKHNCYNCGLLFCRACSSKKIINAPLAPSKSKAFRVCDQCFDKRQGGTHSIMASKSRNYNSQQLLKHQQKIVDVTEDRGETTVTQGPLLSFGQSCYRKSMPSGRKDWKNHPESQQDVEDSSSMLGGMPQWGQVPCPPIFKINGTENPVVHISSSKNKLATVSPFSMESTTYNFSNVETDTTKSEKMLLEEVHRLRTEAKRLEEQCELKNHKIQECQQKIEESWFVAREEAAKCKAAKEVIKALALRLHTISGKDNAGQEAKVGQHEFVPNLATIVTDMKSPRDYSGDSLSNSPIVFSNTIKSKFGRSMFPKNENSNFSSGESQQDNINGLKADWVEQYEPGVYITFTTLPCGKKGLKRVRFSRKRFSEKEAEKWWEENQSTVYHKYGIEGYINTSQSQVKG | 1080 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu2g01884 | 1080 | CDD | PH_PLC_plant-like | 29 | 137 | - | - | |
| Vimu2g01884 | 1080 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 664 | 734 | IPR013083 | - | |
| Vimu2g01884 | 1080 | Gene3D | - | 499 | 663 | IPR009091 | - | |
| Vimu2g01884 | 1080 | Coils | Coil | 863 | 897 | - | - | |
| Vimu2g01884 | 1080 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 385 | 439 | IPR000408 | - | |
| Vimu2g01884 | 1080 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 333 | 384 | IPR000408 | - | |
| Vimu2g01884 | 1080 | Pfam | FYVE zinc finger | 664 | 722 | IPR000306 | GO:0046872 | |
| Vimu2g01884 | 1080 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 555 | 605 | IPR000408 | - | |
| Vimu2g01884 | 1080 | SMART | fyve_4 | 656 | 725 | IPR000306 | GO:0046872 | |
| Vimu2g01884 | 1080 | SUPERFAMILY | PH domain-like | 28 | 136 | - | - |
Showing 1 to 10 of 36 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu2g01884 | - | - | gmx:100797223 | 1971.82 |
Showing 1 to 1 of 1 entries