Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01883 ATGGCTCCTGTTTCACTACCTCCTGGGTTTAGATTCCACCCCACAGATGAAGAACTTGTTTCTTATTATCTCAAAAGAAAGATAAATGGTCGTAAGATCGAGTTAGAGATAATCCCTGAAGTTGATCTTTACAAGTGTGAACCATGGGACTTGCCGGGAAAGTCATTGTTACCGGGAAAAGATTTGGAGTGGTATTTCTTCAGTCCTCGAGATAGGAAATATCCAAATGGATCAAGAACAAATCGTGCAACCAAATCTGGTTACTGGAAAGCCACAGGAAAAGACCGTAAGGTGAATTCTCAGAGTTGTGCAATAGGAATGAAGAAAACCCTAGTTTACTATCGAGGTAGGGCACCACATGGTTGTCGTACAGGTTGGGTTATGCATGAGTATCGTCTTGATGAGACACAGTGTGAAACCAACACAGGCTTGCAGGATGCATATGCTCTTTGTCGTGTGTTCAAGAAGACTGCAGTGATTCCTCCAAAAGTTGGAGATCAACACTATGTTAATGTCACCACCAGCCATGCAAATCAGATCATTGCCAGTGATCAATCATCAAGCATTAACGAGCTATACTCTGAAGGTAGAGGTGAAGTTTTAGAGAGCTCAAACTATTTTATGTCATTGGATGCATGCCCTTCCTCGAACATAAATGTGAATACCTTCAATATCAATGGTGGAAGAAGGGACAATGAGACAACATGGTCGCATTTCTTATCAGAAGACTTGCTCAATCTTCCAACAACATCCACTTCTTCATTTCCCAATTATGGATCCATGAGCTATCCTCCATCAAAGGTGGATGTAGCACTGGAGTGTGCAAGGATGCAGCACAGGTTTAGCATGCCTCCATTGCAGATGCAGGATCTGGAGTTTCCTCAAGTTGGAATTTCCAAGCTGAAGATGGCACAAGGTTCGAGTTCCATGAGTGGAACCAGAAATGAAACAGATATCTTGCAGGAAATTCTTTCGGTTGCTCATGCTTCCCAGGAGTTAATAAATCAATCTAACTACTCATCACAGCCATTCATGAATGCCAATGAAAACTATGCTCCTCATGAAAGTGACTTCACTTTTATGGTTGGCACCAATTACAATCATGTCAACGATATGAACACCATGGGATTTGTTGACAAAGCATGGGAAGACCAAAACACAAGATCAATAGAGATTGGAGATCTTGATGATGGATTCAAGACAGAGAATTTGAGATGGGTGGGAATGTCCAGCAAAGATGTCGGAAAGAGCTTTATGGAAGAGCAGCAAAATATTGTTCCAATTGATGATATCTCAAACTTCCAAACTAACACGGAAGAAAACGAGATGAAAGTAGGATTTGAGAAACACAGTTGCAACAAAGAAATAACTGATACTGAGATTGATGATTTTTCAATGGGATTCATGAATGATGAAGACCCGAATGAGAACTTCCTAAACGAGGAAAACATTGACTATTCAAATCCTACAAACTTTGATGTCGTTGAGGAAACAAAAACCAATCATGGAATGTTTGTCTCGACTCATCAAGTAGCTGATACATTCTTTCATCAAGTAGCTCCTTCACAAACCCTAAAAGTTCAACTGAATCCAGTAATGGGTGGCAATGAGTGTATAGAGAATGCAAGAGTTAGCGAAGGAGTGTCTTTGTTTAGAAAGTTTAAGGCCTATGTGACAGGGAAGCTAAGAAAGGCATCAACAATAGGAAGTGCCATTGAATTCATGTTTGCATTGTTGTTGATGCATTGTGTTTTTCTAAAAGATTGGAAATCATCAGAGCTTAAAAATGGTGGCAGTGTTTACACGATGAAGAGAATGAGAGAAGCAGAAGAGATTGTGAGGAGAAATGAAGAAGAAAAAGTATGGTTGGTTGGAATGAAATATGGGAAAGGTTTTAGCATGGTCCTAAAGAAGATAAGCATTTTTCTCACTATATCGTTGGCTCTGTTTACCATGTGGGCTAACCATATCATAGTTGACTCTTAG 1986 0.4003 MAPVSLPPGFRFHPTDEELVSYYLKRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQSCAIGMKKTLVYYRGRAPHGCRTGWVMHEYRLDETQCETNTGLQDAYALCRVFKKTAVIPPKVGDQHYVNVTTSHANQIIASDQSSSINELYSEGRGEVLESSNYFMSLDACPSSNINVNTFNINGGRRDNETTWSHFLSEDLLNLPTTSTSSFPNYGSMSYPPSKVDVALECARMQHRFSMPPLQMQDLEFPQVGISKLKMAQGSSSMSGTRNETDILQEILSVAHASQELINQSNYSSQPFMNANENYAPHESDFTFMVGTNYNHVNDMNTMGFVDKAWEDQNTRSIEIGDLDDGFKTENLRWVGMSSKDVGKSFMEEQQNIVPIDDISNFQTNTEENEMKVGFEKHSCNKEITDTEIDDFSMGFMNDEDPNENFLNEENIDYSNPTNFDVVEETKTNHGMFVSTHQVADTFFHQVAPSQTLKVQLNPVMGGNECIENARVSEGVSLFRKFKAYVTGKLRKASTIGSAIEFMFALLLMHCVFLKDWKSSELKNGGSVYTMKRMREAEEIVRRNEEEKVWLVGMKYGKGFSMVLKKISIFLTISLALFTMWANHIIVDS 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01883 661 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 302 - -
Vimu2g01883 661 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Vimu2g01883 661 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Vimu2g01883 661 FunFam Nac domain-containing protein 86 15 159 - -
Vimu2g01883 661 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Vimu2g01883 661 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01883 Vimu-Chr2 13673226 13676377 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01883 1 652 NAC Transcription Factor Family AT1G65910 42.899 4.47e-163 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu2g01883 NAM 2.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01883 - - gsj:114381841 1006.13