Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01878 ATGGATGAAACCGATGGCTACAGAAACGTGATGGAAAATTGCAGAGACAACATGTTGGTGCTGAAAGAGGGACTCGAGAAGACAGGGCGGTTTGCCATTGTGTCCAAAGACAATGGTGTGCCTTTGGTTGCTTTCACCCTGAAAGACCACACTCACTTTGACGAGTTTCAAATCTCTGACCTGCTGAGACGTTTTGGATGGATTGTGCCAGCATACACCATGCCCCCAGATGCTCAACATGTTACAGTGCTTCGTGTTGTCATCAGGGAGGACTTTTCAAGAACTCTTGCAGAGCGTCTGGTGGCAGATGTGGAAAAGGTGTTGCATGAGCTTGATGGCCTTCCAGCAAGGGTGATCAGTAGCACCACTGTGGCAGTCAACACAGAAGAAAATGACAAAGTGGTTAAGAAGAGTGCTCTGGAGACACAGAGGGAAATCACTGCGGTTTGGAAGAAGTTTGTGTTGGAGAGGAAGAAGCTCAATGACAAGATGAATGGTGTTTGCTAG 507 0.4753 MDETDGYRNVMENCRDNMLVLKEGLEKTGRFAIVSKDNGVPLVAFTLKDHTHFDEFQISDLLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVADVEKVLHELDGLPARVISSTTVAVNTEENDKVVKKSALETQREITAVWKKFVLERKKLNDKMNGVC 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01878 168 PANTHER GLUTAMATE DECARBOXYLASE 4 158 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vimu2g01878 168 FunFam Glutamate decarboxylase 28 115 - -
Vimu2g01878 168 Gene3D - 28 115 - -
Vimu2g01878 168 SUPERFAMILY PLP-dependent transferases 4 111 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01878 Vimu-Chr2 13621360 13627091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01878 5 168 Calmodulin-binding Proteins AT5G17330 64.497 7.94e-72 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01878 K01580 - gmx:100796533 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01878 2 13621360 13627091 Vimu2g01878 2 13621360 13627091 ECH
Vimu2g01878 2 13621360 13627091 Vimu1g00251 1 1452177 1453406 PCT