LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu2g01877	ATGCCGCCACGCCAAACGCCCTTCTTCATCGTCTTTCTATGTTTTCTCAATGCCTGTTCTTCTGTCTTCGCCACCCAGTTTGACTTTGGAACCTTAACCATGAGCACGCTGAAGCTTCTCGGCGATGCCCATTTGAACAACAACACCGTCAGCCTCACCGGCGACCCCGCCGTCCCAAACTCCGCTGCTGGCAGAGCGCTTTACTCCGACCCCGTCAGATTCCGGCAACCGGGGTCCCCTTCTCCGGCGAGCTTCTCCACCTTCTTCTCCTTCTCTGTCACCAACCTCAATCCATCCTCCGTCGGCGGCGGCCTCGCCTTCGTCATCTCGCCGGACTCCAGCGCTGTCGGCGATTCCGGCGGCTTCCTCGGTCTGCAAAACCCCGCCGCCGCCACTGGCGGTGGCGGCGGGTTCGTCGCTGTTGAATTCGACACCCTGATGGACGTGGAATTCAGCGACATTAATGGAAACCATGTGGGGTTGGACTTAAACAGCGTTGTTTCGGCTCAAGTTAGCGACTTGGGAAGCGTCGGAGTGGATCTTAAAAGCGGGGACTCGGTGAACGCGTGGATCGAGTACGATGGAAGCAACAAAGGGTTGCGCGTGTGGGTCTCGTACTCGACTGTGAGGCCGAAAGATCCGATTTTGAAGGTGGATCTCGATGTCGGTATGTATGTTAATGATTTCATGTATGTGGGGTTTTCTGGGTCTACCCAAGGTAGCACGGAGGTGCACAGTGTTGAGTGGTGGAGTTTCAATTCCTCTTTCGATTCCGCGGCGGCTCCTGCCACCACGTCAGCACCCTCCGCCACTTCACCACCTGAACAGAAGGAAAGTAAGTCTTCTAGGAAGGGTACTGTGGGGGCTGTTGCTGGGGTTGTGACTGCTGGTGCTTTTGTTCTTGCTCTATTTGCTGGTGCATTCATTTGGGTGTATTCTAAGAAGGTGAAGCGAATGAAGAAATTTGATCAATCTATTGAGTCGGAGATTATTAGAATGCCTAAGGAGTTTAGCTACAAGGAGCTGAAATTTGCCACTAAGGGGTTCAGTGCTAATAGGGTCATTGGTCATGGTGCTTTTGGGACCGTGTACAAGGGTGTGCTGCCTGAGAGTGGTGACACTGTTGCGGTGAAGAGGTGTAACCATAGTGGTCAAGGTAAGAGTGAGTTTTTGTCCGAGTTGTCTATAATTGGGAGTCTCAGGCATCGGAATCTGGTTCACCTTCAAGGTTGGTGCCATGAGAAAGGTGAGATTTTGTTGGTGTATGACTTGATGCCCAATGGGAGTTTAGATAAGGCTTTGTATGAGGCTAGGATGCCTTTGTCATGGCCTCACAGGCTCAAAATTTTGTTAGGTGTGTCATCTGTGTTGGCCTACTTGCATCACGAATGTGAAAACCAGGTAATTCATAGGGACATTAAGACTAGTAACATTATGTTAGATGAAGGGTTCAATGCTCGGTTAGGCGATTTTGGTTTAGCAAGACAAACACAACATGATAAGTCTCCTGATGCCACTGTGGCTGCCGGAACAATGGGGTATCTTGCCCCAGAGTATGTGCTTACTGGTAGAGCAACTGAGAAAACTGATGTGTTTAGCTATGGTGCGGTGGTTCTTGAGGTGGCCTGTGGGAGGAGGCCTATTGAGAAAGATGCCGCTGCAAATGGTAAAGTTGGGGTTAGCAGCAATTTGGTGGAATGGGTTTGGAGTTTGCATCAAGAAGGTAAGTTGCTAACAGCAGCTGATCCAAGACTTGAAGGTGAGTTTGAAGAAGGGGAAATGAGGAGGGTACTCTTAGTTGGGTTAGCTTGTTCACACCCAGATTCAATGGCAAGACCAACTATGAGGGGTGCGGTTCAGATGCTGCTTGGTGAGGCTGAAGTGCCTATTGTCCCTAGAGCCAAACCGTCTACTAGTTACAGCACTTCTCACCTCTTATTGAGCCTGCAAGATAGTGAATCTGACTGTAATAATGCTATGATCACCATCTCTACCTCCTCTTCAGAGAACACCCTCAGTGGCAGACTTATACTCTGA	2037	0.5022	MPPRQTPFFIVFLCFLNACSSVFATQFDFGTLTMSTLKLLGDAHLNNNTVSLTGDPAVPNSAAGRALYSDPVRFRQPGSPSPASFSTFFSFSVTNLNPSSVGGGLAFVISPDSSAVGDSGGFLGLQNPAAATGGGGGFVAVEFDTLMDVEFSDINGNHVGLDLNSVVSAQVSDLGSVGVDLKSGDSVNAWIEYDGSNKGLRVWVSYSTVRPKDPILKVDLDVGMYVNDFMYVGFSGSTQGSTEVHSVEWWSFNSSFDSAAAPATTSAPSATSPPEQKESKSSRKGTVGAVAGVVTAGAFVLALFAGAFIWVYSKKVKRMKKFDQSIESEIIRMPKEFSYKELKFATKGFSANRVIGHGAFGTVYKGVLPESGDTVAVKRCNHSGQGKSEFLSELSIIGSLRHRNLVHLQGWCHEKGEILLVYDLMPNGSLDKALYEARMPLSWPHRLKILLGVSSVLAYLHHECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTQHDKSPDATVAAGTMGYLAPEYVLTGRATEKTDVFSYGAVVLEVACGRRPIEKDAAANGKVGVSSNLVEWVWSLHQEGKLLTAADPRLEGEFEEGEMRRVLLVGLACSHPDSMARPTMRGAVQMLLGEAEVPIVPRAKPSTSYSTSHLLLSLQDSESDCNNAMITISTSSSENTLSGRLIL	678

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu2g01877	678	CDD	lectin_legume_LecRK_Arcelin_ConA	25	256	IPR001220	GO:0030246
	Vimu2g01877	678	Gene3D	-	23	270	-	-
	Vimu2g01877	678	CDD	STKc_IRAK	355	622	-	-
	Vimu2g01877	678	ProSitePatterns	Legume lectins beta-chain signature.	139	145	IPR019825	-
	Vimu2g01877	678	Gene3D	Transferase(Phosphotransferase) domain 1	425	628	-	-
	Vimu2g01877	678	ProSitePatterns	Protein kinases ATP-binding region signature.	355	378	IPR017441	GO:0005524
	Vimu2g01877	678	Pfam	Protein kinase domain	351	572	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu2g01877	678	ProSiteProfiles	Protein kinase domain profile.	349	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu2g01877	678	SUPERFAMILY	Concanavalin A-like lectins/glucanases	23	257	IPR013320	-
	Vimu2g01877	678	FunFam	L-type lectin-domain containing receptor kinase VIII.1	425	640	-	-
	Vimu2g01877	678	Gene3D	Phosphorylase Kinase; domain 1	310	424	-	-
	Vimu2g01877	678	MobiDBLite	consensus disorder prediction	263	284	-	-
	Vimu2g01877	678	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	468	480	IPR008271	GO:0004672\|GO:0006468
	Vimu2g01877	678	FunFam	L-type lectin-domain containing receptor kinase VIII.1	312	424	-	-
	Vimu2g01877	678	SMART	serkin_6	349	622	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu2g01877	678	PANTHER	-	47	632	-	-
	Vimu2g01877	678	SUPERFAMILY	Protein kinase-like (PK-like)	331	658	IPR011009	-
	Vimu2g01877	678	FunFam	L-type lectin-domain containing receptor kinase VIII.1	23	266	-	-
	Vimu2g01877	678	Pfam	Legume lectin domain	25	264	IPR001220	GO:0030246

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu2g01877	Vimu-Chr2	13617345	13620550	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu2g01877	8	662	Receptor kinase-like Gene Family	AT3G53380	65.462	0.0	867

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vimu2g01877		Pkinase	3.1e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu2g01877	-		-	var:108341139	1253.81