Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01873 ATGATGGCCATGCTAAGTTTCCTTTTCATTGTGGTGCTTTTACCCTCCTTTGAGGCTCTCTCATATGAAGGCATTCCCTCAGAAATCCAAACCCAAGACATGCAAGCATTGATTGCACAAGCATGCATGGACATTGAAAACCAAAACTCCTGCCTCACAAACATCCACAACGAGCTCACTAAAATAGGCCCTCCAAGTCCCACTTCAGTGATGAGTGCAGCACTGAAGGCCACAATCAACGAAGCAATAGTGGCCATTGACAACATGACAAAGATCACCACATTCTCCGTCAGCTACCGCGAGCAACAAGCCATAGAAGATTGCAAGGAGCTCTTGGATTTCTCAGTTTCTGAGCTCGCATGGTCCTTGGGAGAGATGAGGAGGATTCGCGCAGGAGATACCAACGTGCAATACGAGGGAAACCTTGAAGCCTGGCTTAGTGCTGCACTGAGCAACCAAGACACGTGCCTTGAAGGCTTTGAAGGAACAGACAGACGCCTCGAGAGCTACATCAGTGGAAGCTTGACACAAGTCACACAACTCATCAGCAATGTTTTGTCCCTGTACACTCACTTGCATACCTTACCATTTAAGCCTCCAAGAAACACTACTACTGCGGAATCTGATGGAACCTCGGAGTTTCCAGAATGGATGACTGAGGGTGATCAAGAGTTGCTCAGAGCCAAGCCACATGGTGTGCGTGCGGATGCAGTTGTTGCTTTGGATGGGAGTGGTCACTATCGTTCCATCGCCGAAGCTGTTAATGCAGCTCCCAGTCACAGTGAAAGAAGGTATATTATTTACGTGAAAAAAGGACTTTACAAGGAGAATATTGACATGAAGAAGAAGATGACCAACATCATGCTCGTCGGAGATGGTATAGGTCAAACCATTATCACCAGCAACCGAAATTTCATGCAGGGATGGACCACCTTTCGAACGGCCACGCTTGCTGTGTCTGGGAAGGGTTTCATTGCAAGGGACATGTCGTTCCGGAACACAGCAGGGCCGGTGAACCATCAAGCGGTGGCGCTGCGTGTGGATTCAGACCAATCAGCCTTCTACAGGTGCAGTGTGGAAGGGCACCAAGACACGCTCTACGCCCACTCCCTGCGACAGTTCTACCGTGAGTGCGAAATCTATGGCACCATAGACTTCATTTTCGGCAACGGTGCTGCAGTACTGCAAAACTGCAAAATATACACCAGGGTCCCACTTCCCTTGCAGAAGGTTACCATCACGGCGCAAGGCAGAAAAAGCCCACACCAGAGCACGGGCTTCACCATCCAGGACAGCTATATTCTCGCCACCCAGCCCACCTACTTGGGCCGGCCCTGGAAACAATACTCCAGGACGGTTTACATTAACACTTACATGAGTGGGCTTGTCCAGCCCCGAGGCTGGCTTGAGTGGCTCGGAAACTTTGCCCTCAACACTTTGTGGTACGGTGAGTACAGAAATTATGGGCCCGGTGCATCGGTGGTGGGCCGGGTGAGATGGCCCGGTTATCATGTAATTAAAGATGCTTCCACCGCTAGCTTTTTCACCGTTCAGAGGTTCATTAATGGTGACACGTGGCTGCCAAGGACAGGTGTCAAGTTCACAGCAGGTCTCACCAATTGA 1623 0.5015 MMAMLSFLFIVVLLPSFEALSYEGIPSEIQTQDMQALIAQACMDIENQNSCLTNIHNELTKIGPPSPTSVMSAALKATINEAIVAIDNMTKITTFSVSYREQQAIEDCKELLDFSVSELAWSLGEMRRIRAGDTNVQYEGNLEAWLSAALSNQDTCLEGFEGTDRRLESYISGSLTQVTQLISNVLSLYTHLHTLPFKPPRNTTTAESDGTSEFPEWMTEGDQELLRAKPHGVRADAVVALDGSGHYRSIAEAVNAAPSHSERRYIIYVKKGLYKENIDMKKKMTNIMLVGDGIGQTIITSNRNFMQGWTTFRTATLAVSGKGFIARDMSFRNTAGPVNHQAVALRVDSDQSAFYRCSVEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSYILATQPTYLGRPWKQYSRTVYINTYMSGLVQPRGWLEWLGNFALNTLWYGEYRNYGPGASVVGRVRWPGYHVIKDASTASFFTVQRFINGDTWLPRTGVKFTAGLTN 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01873 540 Gene3D - 231 538 IPR012334 -
Vimu2g01873 540 CDD PMEI-like_3 50 194 - -
Vimu2g01873 540 PANTHER PECTINESTERASE 9 528 - -
Vimu2g01873 540 NCBIfam pectinesterase inhibitor domain 4 193 IPR006501 GO:0004857
Vimu2g01873 540 FunFam Pectinesterase 230 538 - -
Vimu2g01873 540 Pfam Plant invertase/pectin methylesterase inhibitor 37 188 IPR006501 GO:0004857
Vimu2g01873 540 Pfam Pectinesterase 236 524 IPR000070 GO:0030599|GO:0042545
Vimu2g01873 540 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 192 IPR035513 -
Vimu2g01873 540 SUPERFAMILY Pectin lyase-like 233 537 IPR011050 -
Vimu2g01873 540 ProSitePatterns Pectinesterase signature 2. 380 389 IPR033131 -
Vimu2g01873 540 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 193 IPR035513 -
Vimu2g01873 540 SMART PMEI_2 33 188 IPR006501 GO:0004857
Vimu2g01873 540 FunFam Pectinesterase 35 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01873 Vimu-Chr2 13584561 13586271 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01873 9 540 Carbohydrate Esterase AT3G05620 63.787 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01873 K01051 - gmx:100810565 1008.05