Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01872 ATGGCTATTTCCAAGGTATTCTTGGTCTTCTTTCTAAGCATTTTCTTTAACTATGCATTTGTTGCATCTTCATCGGATTCCTCCGATACCATTTGCAACCTTACACCATATCCATCATTCTGCGAATCCAACTCACCTTATGGCCATGGTGACATACACGAATATGGTCGTTTTTTCGTAGACAAATCCTTGTCATCCTCAAAGAAGTTTCTCTCGTTACTCTCTCATTACCTTAAATCGCCATCCAAGTTCTCAAACTCCACAATCCTTGCCATTCAAGATTGTCATCTTCTAGCTGACCTAAACAAGAGTTTTTTGTCCAAGACCCTAAAATCCATCAATTTCACTGATGCCCTCGATGGCTCAGAAGCTGAAAAATTTCACACTATGCTTAGTGCTACACTGACCAACCAAGAAACTTGCTTAAACAGCCTTCAAGAAACCACGTCAAACCCCGACAAAGACCTACTAACGCATCTTTCCAATGGAACCAAGCTTCATAGCATATCTCTTGCCATCTTCAAGAGGGGATGGAAAGCCAAGAACAACACAGAGAGAAAACTTGAAAGAAATGATCACTTCATGTGGGAACGGAAGCTGTACGACCTAATCAGAAGAAAAGGAAGAAAACTTCTTCAGTTGGGTGCAGACAACGTTGTAGTCAACCAAAGCGTGGTGGTGAACCCAGACGGTTCTGGAAACTACACGACAATCAATGATGCAGTGGCTGCTGCTCCAAATAACTCACAGGGTAGTAACGGGTTTTTCGTGATTCATGTGGTCGGTGGAGTGTATGAAGAGTACGTTTCTATTCCCAGACAGAAGCAGTACCTGATGATGATAGGAGATGGAATTAACCAGACCATAATCACGGGCAATCACAGCGTGGTTGATGGTTGGACTACTTTCAATTCTGCTACATTCGCCGTGACTGCTCAAGGTTTTGTGGCAATCAACATAACATTTCGCAACACAGCAGGAGCAATGAAGCACCAAGCAGTAGCCCTCAGAAGCGGAGCAGACTTGTCTGCATTTTACAATTGTAGCTTTGAAGGGTACCAAGACACGTTGTACACCCATTCTCTTCGGCAATTCTACAGAAACTGTGATATTTATGGTACAGTGGACTTCATATTTGGTAATGCAGCAGTGGTCTTGCAAAACTGTAACATCTACCCTAGACTCCCAATGCAAAACCAATTCAATGCCATTACTGCACAGGGTAGGACTGACGTGAACCAAAATACTGGAACCTCCATACACAATTGTACCATAACAGGGGCGAGTGACTTGGCCGGAAGTAATGGCACCACAAAAACGTACCTAGGAAGACCCTGGAAGCAATATTCACAAACAGTTTATATGCAGTCTTTCATGGACAGTTTGATAGATCCACTGGGTTGGGTAGCTTGGTCTGGGGACTTTGCTTTGGACACCCTTTATTATGCGGAATTTGATAATGGTGGGCCTGGATCTGATACCAGTAATAGGGTTACTTGGCTTGGGTACCATGTCATCAATGCTACAGATGCAGTTAATTTTACAGTTTCTAATTTCATACAAGGTGCTTTCTGGCTTCCTGCAACAGGACTACCTTACTCTCCTGATTTACTTACACCTTAG 1623 0.4313 MAISKVFLVFFLSIFFNYAFVASSSDSSDTICNLTPYPSFCESNSPYGHGDIHEYGRFFVDKSLSSSKKFLSLLSHYLKSPSKFSNSTILAIQDCHLLADLNKSFLSKTLKSINFTDALDGSEAEKFHTMLSATLTNQETCLNSLQETTSNPDKDLLTHLSNGTKLHSISLAIFKRGWKAKNNTERKLERNDHFMWERKLYDLIRRKGRKLLQLGADNVVVNQSVVVNPDGSGNYTTINDAVAAAPNNSQGSNGFFVIHVVGGVYEEYVSIPRQKQYLMMIGDGINQTIITGNHSVVDGWTTFNSATFAVTAQGFVAINITFRNTAGAMKHQAVALRSGADLSAFYNCSFEGYQDTLYTHSLRQFYRNCDIYGTVDFIFGNAAVVLQNCNIYPRLPMQNQFNAITAQGRTDVNQNTGTSIHNCTITGASDLAGSNGTTKTYLGRPWKQYSQTVYMQSFMDSLIDPLGWVAWSGDFALDTLYYAEFDNGGPGSDTSNRVTWLGYHVINATDAVNFTVSNFIQGAFWLPATGLPYSPDLLTP 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01872 540 Pfam Pectinesterase 225 522 IPR000070 GO:0030599|GO:0042545
Vimu2g01872 540 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 176 IPR035513 -
Vimu2g01872 540 PANTHER PECTINESTERASE 14 527 - -
Vimu2g01872 540 CDD PMEI-like_3 30 179 - -
Vimu2g01872 540 Gene3D - 218 537 IPR012334 -
Vimu2g01872 540 Pfam Plant invertase/pectin methylesterase inhibitor 29 173 IPR006501 GO:0004857
Vimu2g01872 540 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 176 IPR035513 -
Vimu2g01872 540 FunFam Pectinesterase 218 537 - -
Vimu2g01872 540 SUPERFAMILY Pectin lyase-like 222 536 IPR011050 -
Vimu2g01872 540 SMART PMEI_2 23 173 IPR006501 GO:0004857
Vimu2g01872 540 NCBIfam pectinesterase inhibitor domain 2 175 IPR006501 GO:0004857
Vimu2g01872 540 ProSitePatterns Pectinesterase signature 2. 371 380 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01872 Vimu-Chr2 13577009 13579291 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01872 4 539 Carbohydrate Esterase AT1G02810 53.022 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01872 K01051 - gmx:100801141 857.055