Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01871 ATGCAGGAGCTCTTGCAAACCGCCATGCACATGACCAGCAACGGCCTCTCTATCATCTCCGAGCTGTCGAAGACTTTCTCCGAGATGCACGTCCCCAAGTCTGGCCGCCGCCTCTTGACGACCGCCGACGATTTGCCCGTTTTTGGCAACGAAAGCGACGACTTTGACGTTCCCGATTGGGTTGAGAACCGCGTTGGCCTTCGCAGACTCTTGCATATGACTGGACGCAAACAAATGGCCCATGTGGATGGCAGTGGAAATTTCACCACCATCAACGAAGCCTTGAAGCACGTGCCCATGAAAAACCTAAGGCCTTTTATCATCTACATCAAGGAGGGCGTTTACGACGAGTACGTGGAAGTTTCCAGGAATATGACCCATGTCGTCTTTATCGGTGATGGTGGTAGGAAGTCGAGGATCACAGGCAGCAAAAACTTCATCGATGGTGTGGGAACCTACAAAACCGCCAGTGCCGCCATTATTGGAGATTTCTTCGTCGCCATAGGTATGGGATTTGAAAACACAGCCGGCGCTGAAAAACATCAAGCCGTGGCATTGAGGGTTCAATCTGACAGGTCCATCTTCTACAAGTGCCGAATGGATGGGTATCAAGACACTCTTTACGCCCACGCCATGCGTCAATTCTACCGCGACTGCACCATTTCTGGTACCATAGACTTTGTGTTCGGCGATGCAGTGGCTGTGCTCCAGAACTGCACATTCGTTGTCCGAAAGCCGTTGGAAAACCAGCAATGCATTGTGACCGCACAAGGTAGAAAGGAGAGCAACCAGCCATCGGGTCTGGTGATCCATGGAGGATCGATTGTGTCAGACCCCTTGTATTACCCAGTTAGGTTCGACAACAAGGCGTACTTGGCTCGTCCATGGAAGAATTTCTCAAGGACCATCTTCATGGATTCGTTCATCGATGACTTGATCACACCGGACGGCTACATGCCATGGCAGACATTGGAAGGTTTAAGCGGAATGGACACTTGTTTCTACGCTGAGATAAACAACCATGGCCCTGGTGCAGACATATCAAAGCGTGTGAAATGGGAAGGAATCAAGTCCCTGACGAAGGACGTAGCAACAACATTCTTGCCATCATCCTTCTTCCATGGAGATGACTGGATTAGGGTTACAAGGGTTCCTTACGACTCTGGCCTGCCCTCCGCCACTCACTGA 1188 0.5084 MQELLQTAMHMTSNGLSIISELSKTFSEMHVPKSGRRLLTTADDLPVFGNESDDFDVPDWVENRVGLRRLLHMTGRKQMAHVDGSGNFTTINEALKHVPMKNLRPFIIYIKEGVYDEYVEVSRNMTHVVFIGDGGRKSRITGSKNFIDGVGTYKTASAAIIGDFFVAIGMGFENTAGAEKHQAVALRVQSDRSIFYKCRMDGYQDTLYAHAMRQFYRDCTISGTIDFVFGDAVAVLQNCTFVVRKPLENQQCIVTAQGRKESNQPSGLVIHGGSIVSDPLYYPVRFDNKAYLARPWKNFSRTIFMDSFIDDLITPDGYMPWQTLEGLSGMDTCFYAEINNHGPGADISKRVKWEGIKSLTKDVATTFLPSSFFHGDDWIRVTRVPYDSGLPSATH 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01871 395 ProSitePatterns Pectinesterase signature 2. 221 230 IPR033131 -
Vimu2g01871 395 PANTHER PECTINESTERASE 4 380 - -
Vimu2g01871 395 Pfam Pectinesterase 82 376 IPR000070 GO:0030599|GO:0042545
Vimu2g01871 395 ProSitePatterns Pectinesterase signature 1. 102 121 IPR018040 -
Vimu2g01871 395 FunFam Pectinesterase 73 390 - -
Vimu2g01871 395 Gene3D - 76 390 IPR012334 -
Vimu2g01871 395 SUPERFAMILY Pectin lyase-like 82 388 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01871 Vimu-Chr2 13573514 13574808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01871 1 390 Carbohydrate Esterase AT3G05610 49.874 3.34e-140 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01871 K01051 - gmx:100801686 682.174