Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01860 ATGGTATGCTGTTTTCTTCTTCGTCTCTGTTTTGTTCCTTCGAACGAGGCTGTAATCAGTGTTAAGGGGATCGATCTTAAGGCTGGGGGTAAGAGCAAGAAGACCAAAAGAACAGCACCCAAGTCCAACGACATATACCTCAAACTACTTGTCAAGCTGTATCGATTCCTTGTTCGGAGGACTGGCAGCAATTTCAATGCTGTGATACTCAAGCGCTTGTTCATGAGTAAGGTGAACAAGCCTCCAATTTCGTTGTCGAGGTTGATTAAGTATACAAAAGGGAAGGAAGATAAAATTGCTGTTATAGTGGGGACTGTAACTGATGATATCAGAGTATATGAAGTTCCACCATTGAAAATTACAGCACTCAAGTTTACAGAGAGGGCACGTGCAAGAATAGAGAAGGCAGGTGGTGAATGCTTGACATTTGATCAACTTGCCCTTAGGGCTCCTTTGGGACAGAATACGGTCCTTTTAAGAGGCCCAAAGAATGCTCGGGAAGCTGTGAAACACTTTGGTCCTGCTCCTGGTGTGCCACACAGCCATACCAAACCCTATGTTCGGTCTAAGGGAAGAAAGTTTGAGAAGGCAAGAGGAAGAAGGAACAGCAGAGGATTTAGAGTTTAA 627 0.4418 MVCCFLLRLCFVPSNEAVISVKGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKYTKGKEDKIAVIVGTVTDDIRVYEVPPLKITALKFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFRV 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01860 208 SUPERFAMILY Ribosomal proteins L15p and L18e 41 160 IPR036227 -
Vimu2g01860 208 PANTHER 60S RIBOSOMAL PROTEIN L18 23 208 IPR000039 GO:0003735|GO:0005840|GO:0006412
Vimu2g01860 208 Pfam Ribosomal protein 60S L18 and 50S L18e 23 208 IPR021131 -
Vimu2g01860 208 Gene3D - 22 208 - -
Vimu2g01860 208 FunFam 60S ribosomal protein L18 22 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01860 Vimu-Chr2 13449520 13451113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01860 24 208 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 77.957 6.66e-102 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01860 K02883 - gmx:100527681 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01860 2 13449520 13451113 Vimu3g02064 3 35545270 35547093 PCT