Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01859 ATGATGATGACAACAATGGAGGGGATGATGGACAAGGCCGTCTTGGATGACGTCATTCGGAGGCTTCTCGAAGGGAAAGGAGGCAAACAGGTTCAGCTCTCTGAGTCCGAGATCCGTCAACTCTGCGTCAATGCCCGACAAATCTTCCTCTCTCAGCCAATTCTTCTCGAGCTCCGTGCCCCCATCCGCATCGGCGGTGATATACATGGTCAGTACCAGGACTTACTGAGGCTTTTTGAATATGGTGGCTTCCCTCCTGCGGCAAACTACTTGTTTCTGGGGGATTATGTGGACAGAGGGAAGCAAAGTTTGGAGACTATTTGTTTGCTTTTGGCCTACAAAATAAGATATCCAGACAAAATTTTTCTCTTGAGGGGAAACCATGAAGAAGCAAAGATTAACCGTATATATGGTTTTTATGATGAATGTAAAAGGAGGTTCAATGTACGGTTATGGAAGATATTCACCGACTGCTTTAACTGTTTGCCGGTGGCTGCTCTCATTGATGAGAAAATACTTTGTATGCATGGGGGACTCTCTCCAGAGTTAGAAAATTTAGATCTGATAAGAGAGATTCAAAGGCCTACTGAAATTCCAGATAGTGGTCTCCTTTGTGATCTGCTTTGGTCTGATCCTGATGCTAGCATTGAGGGTTGGGCGGATAGTGACCGAGGCGTTTCATGTACCTTTGGACCTGATGTACTTATGGAGTTTTTGGATAAAAATGACCTTGATCTTGTTTGCAGAGGGCATCAGGTTGTGGAGGATGGATATGAGTTCTTTGCTAAAAGAAGATTAGTCACGATATTTTCTGCTCCGAATTATGGTGGAGAATTTGACAATGCTGGTGCATTGTTAAGCGTTGATGATTCTCTTGTATGTTCCTTTGAGATATTGAAACCCGCTGATAGAGCATCAGGAAGTAGTTCTTCGAAAATGAATTTTAAGAAGGTTTGTGCATCATACTGGTATCTGATGCAACAACTTTTTTCAGCAGCCACCCAAACTGGGAAAGATCTAGTAATTGGCAAAGATTTTCGGTTCAAATAG 1050 0.4305 MMMTTMEGMMDKAVLDDVIRRLLEGKGGKQVQLSESEIRQLCVNARQIFLSQPILLELRAPIRIGGDIHGQYQDLLRLFEYGGFPPAANYLFLGDYVDRGKQSLETICLLLAYKIRYPDKIFLLRGNHEEAKINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDEKILCMHGGLSPELENLDLIREIQRPTEIPDSGLLCDLLWSDPDASIEGWADSDRGVSCTFGPDVLMEFLDKNDLDLVCRGHQVVEDGYEFFAKRRLVTIFSAPNYGGEFDNAGALLSVDDSLVCSFEILKPADRASGSSSSKMNFKKVCASYWYLMQQLFSAATQTGKDLVIGKDFRFK 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01859 349 Pfam Calcineurin-like phosphoesterase 66 253 IPR004843 GO:0016787
Vimu2g01859 349 PRINTS Serine/threonine phosphatase family signature 186 213 IPR006186 GO:0016787
Vimu2g01859 349 PRINTS Serine/threonine phosphatase family signature 123 147 IPR006186 GO:0016787
Vimu2g01859 349 PRINTS Serine/threonine phosphatase family signature 243 263 IPR006186 GO:0016787
Vimu2g01859 349 PRINTS Serine/threonine phosphatase family signature 265 281 IPR006186 GO:0016787
Vimu2g01859 349 PRINTS Serine/threonine phosphatase family signature 90 117 IPR006186 GO:0016787
Vimu2g01859 349 PRINTS Serine/threonine phosphatase family signature 61 88 IPR006186 GO:0016787
Vimu2g01859 349 PRINTS Serine/threonine phosphatase family signature 157 183 IPR006186 GO:0016787
Vimu2g01859 349 Pfam Serine-threonine protein phosphatase N-terminal domain 15 59 IPR031675 -
Vimu2g01859 349 SMART pp2a_7 33 303 IPR006186 GO:0016787
Vimu2g01859 349 FunFam Serine/threonine-protein phosphatase 6 311 - -
Vimu2g01859 349 SUPERFAMILY Metallo-dependent phosphatases 10 304 IPR029052 -
Vimu2g01859 349 CDD MPP_PP1_PPKL 14 301 - -
Vimu2g01859 349 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 18 312 - -
Vimu2g01859 349 ProSitePatterns Serine/threonine specific protein phosphatases signature. 124 129 IPR006186 GO:0016787
Vimu2g01859 349 Gene3D - 7 310 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01859 Vimu-Chr2 13445605 13447842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01859 62 249 Calmodulin-binding Proteins AT5G63870 33.184 5.48e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01859 K06269 - gmx:100813792 619.387