Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01856 ATGAGTCGAGGAAGTGCAGCAGGAGCGAAGGGGAAGAAGAAGGGGGCGACATTCACCATTGACTGTGCAAAGCCAGTGGAAGACAAGATCATGGACATTGCTTCTCTCGAGAAGTTTCTTCAAGAGAGGATCAAGGTCGGTGGCAAGGCTGGTGCTCTTGGTGACTCCGTTACTGTTACCCGCGAGAAGACAAAGATCATTGTCACCTCTGACAGTAACTTCTCCAAAAGGTATCTGAAGTACTTGACTAAGAAGTACTTGAAGAAACACAATGTGCGAGACTGGCTCAGAGTGATTGCTTCGAACAAGGATAGAAATGTTTATGAATTGAGGTACTTCAACATTGCTGAGAATGAGGGTGAGGAGGAAGATTAG 375 0.4613 MSRGSAAGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKIIVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01856 124 PANTHER 60S RIBOSOMAL PROTEIN L22 2 124 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vimu2g01856 124 Pfam Ribosomal L22e protein family 14 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vimu2g01856 124 FunFam 60S ribosomal protein L22-2 5 124 - -
Vimu2g01856 124 Gene3D - 5 124 IPR038526 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01856 Vimu-Chr2 13421940 13422810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01856 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 87.903 2.09e-68 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01856 K02891 - gmx:100499952 215.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01856 2 13421940 13422810 Vimu3g02066 3 35564344 35564929 ECH
Vimu3g02066 3 35564344 35564929 Vimu2g01856 2 13421940 13422810 ECH
Vimu2g01856 2 13421940 13422810 Vimu2g01856 2 13421940 13422810 ECH
Vimu2g01856 2 13421940 13422810 Vimu3g02066 3 35564344 35564929 PCT