Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01841 ATGAGGTTCATGTTCATCATTACCTTGTTGTTCTTATCATTGCAAAGAGCCAACATTTTGGCTGTGACTGCCGCGTGGAATGCAGTAGGAAATGAAAATCAAATCAAGAAAACCTCAGGGGATGGTGACAATGAAAACAAGGAAACTCCTAGACTTGAAAACTTCAGAACTTTGCTTGGACTCAAGTCACCCAACAGGTTTCGTACAAGAAGGTCATGCTATAGCGTTTTTTACTCTGACTTTGTCTCCCTCTCGGCTTCTCTGTCATCCAAAACCCAAGCTGAGGCTCCGAATTCGGAGCTGCACGTGCCTCCTGGTTCCTATCACTCACATAGAAGCATGCCACTTCCCAAGATTCAACAACAAGATAGAGGTAGCGCAAATAGAACAACACTAGTGGCTGCTGTAGTATCTGGTGGAGTTGCTACCTTAATCTGTGCACTTGGGTGTGTCTGTGTTTGCAAGAGATTTGGAAATCAGAAATGGAAACCCAATAGGACAATGCCACTCTTTAGCAAACACGGAAGAACAGGAGGTACGTGCCATAATTCATCAAGCAATGTGAGTTTAAACTTTGATCCTGATTTCCTTTCCTTGAAACAAACTTGTGGGACACAAAGCAGCACTTCAAGCCGTAGTTCCCTAAAACGTGCAATTAATGAGGAGAAAGTGTTGAATCAAGAAGAAAATGACAATGCCAGCACTGGCAGTTCTTCCACCAAGGAAACTCTATCTGTTCACGAGGATTTGGAATATGATGGTGGCAAAGCTTCCTCTGCAGAAAGAACTGTCCCTGAAGAATGTCATTCATCGTCAGATTTCGAAAGTTTTCATTCATGTGTTGAAACAGAACCACTATTTCTTTCTCCTGGAAATTTAATTTCTGCGACAACTCAATTTCCTTGTTCTTCTCACGGTTCAACTTCAAAGGTAGAATCTAACCAATCACCATCCACACCAAAAGACGAAGAGCAAAAGAGGAGTGAAACTTCTCAACCTAGCATTCCTCCCCCGCCAAGTCCACCTCCGTTTTTGAAAGGAAACATGAACAGTGTGATCAAAACCCCACCTTCTCAACAACTGCCAAAACTCAAACCACTTCACTGGGACAAAGTAAGAGCCACGCCAGATCGAACAATGGTGTGGGATACGCTTCGAACAAATTCGTTTGAGTTGGATGAGGAAATGATCGAGTCACTCTTTGGCTACAATTTACAGAATTCAACAAAGAACAACGAAACAATAAGTAAAACCCTCTCCCCTAAGGAGCATGTACTTGAGCCAAAACGACTGCAAAATATAGCAATACTCTCTAAAGCTCTAAATATCACGGCAGAAGAAGTGTGTGAAGCTCTAATACTAGGGAAGGGTTTGTCTCTGCAACAACTGGAGGCACTGGTAAAAATGGTACCAACTAAAGAAGAAGAGGATAAGCTATTGAACTACAAAGGAAGTATCAATGAACTTGGGTTCGCTGAAAATTTCGTGAGAGTGATGCTTAGCATACCATTTGCTTTTCAACGAGTGGAAGCCATGCTTTACAGAGAAACTTTCGAAGATGAAGTTAATCACATCAGTAACTCTTTCAAAATGCTAGAGGAAGCATGCAAGGAACTAAGGTCAAGCAAGTTCTTCATGAAATTGCTGGAAGCAGTGCTGAAAACAGGAAACCGCATGAACGTGGGGACAACAAGGGGAGGTGCTAGAGCTTTCAAACTCGATGCCCTTCTCAAGCTTGCTGATGTTAAAGGAACAGATGGAAAAACCACCCTGCTCCATTTCTTTGTTCAGGAGATAGTTCGCTCAGAAGGGACCAAAGCTTCAAAGAACATCATGGGACAGAAGAGTGAAAAGAGAACGGAGGAAGAGGAGGAAGAAGATTATAGAAGAACGGGACTAAAACTTGTGTCTGGTCTTAGTGCTGAGTTATGCAATGTCAAAAAGACTGCGACAATTGACTTAAACGTGCTTGCAAGTTCTGTCTCGAACTTATCAAGTGGGTTGGCTAACATACAGAAGCTAGTAAAAGGGTTGTTATGTGAAGATGAAAAAAACAAGAGCTTTGTGATTTCTATGAAGTTGTTCCTGAATTATGCAGAAAGAAAGGTGCAAGAGTTGCATGGAGATGAAGCTAGAGTGATGGGTCGGGTAAAAGAAGTAACTGAGTATTTTCATGGGGATGTGAGTGACGAAGAATCGAATCCACTTCAAATATTTGTAATAGTAAGGGACTTTCTGGGTATGGTGAATAATGTCTGCAATGAGCTTAAAAGGTCTATGAAATCCCCTCGCACTATTTGGATTTAG 2307 0.4192 MRFMFIITLLFLSLQRANILAVTAAWNAVGNENQIKKTSGDGDNENKETPRLENFRTLLGLKSPNRFRTRRSCYSVFYSDFVSLSASLSSKTQAEAPNSELHVPPGSYHSHRSMPLPKIQQQDRGSANRTTLVAAVVSGGVATLICALGCVCVCKRFGNQKWKPNRTMPLFSKHGRTGGTCHNSSSNVSLNFDPDFLSLKQTCGTQSSTSSRSSLKRAINEEKVLNQEENDNASTGSSSTKETLSVHEDLEYDGGKASSAERTVPEECHSSSDFESFHSCVETEPLFLSPGNLISATTQFPCSSHGSTSKVESNQSPSTPKDEEQKRSETSQPSIPPPPSPPPFLKGNMNSVIKTPPSQQLPKLKPLHWDKVRATPDRTMVWDTLRTNSFELDEEMIESLFGYNLQNSTKNNETISKTLSPKEHVLEPKRLQNIAILSKALNITAEEVCEALILGKGLSLQQLEALVKMVPTKEEEDKLLNYKGSINELGFAENFVRVMLSIPFAFQRVEAMLYRETFEDEVNHISNSFKMLEEACKELRSSKFFMKLLEAVLKTGNRMNVGTTRGGARAFKLDALLKLADVKGTDGKTTLLHFFVQEIVRSEGTKASKNIMGQKSEKRTEEEEEEDYRRTGLKLVSGLSAELCNVKKTATIDLNVLASSVSNLSSGLANIQKLVKGLLCEDEKNKSFVISMKLFLNYAERKVQELHGDEARVMGRVKEVTEYFHGDVSDEESNPLQIFVIVRDFLGMVNNVCNELKRSMKSPRTIWI 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01841 768 ProSiteProfiles Formin homology-2 (FH2) domain profile. 354 768 IPR015425 -
Vimu2g01841 768 MobiDBLite consensus disorder prediction 612 626 - -
Vimu2g01841 768 Pfam Formin Homology 2 Domain 358 749 IPR015425 -
Vimu2g01841 768 SMART it6_source 353 764 IPR015425 -
Vimu2g01841 768 SUPERFAMILY Formin homology 2 domain (FH2 domain) 336 761 - -
Vimu2g01841 768 MobiDBLite consensus disorder prediction 299 316 - -
Vimu2g01841 768 MobiDBLite consensus disorder prediction 222 246 - -
Vimu2g01841 768 PANTHER FORMIN-RELATED 14 761 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vimu2g01841 768 MobiDBLite consensus disorder prediction 229 243 - -
Vimu2g01841 768 MobiDBLite consensus disorder prediction 607 626 - -
Vimu2g01841 768 MobiDBLite consensus disorder prediction 299 365 - -
Vimu2g01841 768 Gene3D Formin, FH2 domain 348 761 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01841 Vimu-Chr2 13310106 13312784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01841 336 757 FH2 protein (formin) Gene Family AT3G05470 67.916 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01841 - - gmx:100805407 1015.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01841 2 13310106 13312784 Vimu2g01841 2 13310106 13312784 ECH
Vimu2g01841 2 13310106 13312784 Vimu3g02077 3 35659691 35663494 PCT