Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01831 ATGTCAAACTCAAACATCACAAGCTGTGATAGTTGGAGCTTCTCCACAGAGAACACCGGAGAAGATGCAGCAGCAGCAGCAGCAGCACTTAAACACCAGCAACTAGAGATGCTTCCCCAAAACCATAGTCCAAATTCAAACACTTCAACTACAACAAATAATAGCAATGCCTCAAACACAAATTCACAACCACCTCACAAGAAGAAAAGAAACCTACCAGGGAATCCAGACCCGAATGCGGAAGTGGTAGCCCTGTCGCCGAACACCCTGGTGGCCACAAACAGGTTCGTGTGTGAAATATGCAACAAAGGGTTTCAGAGGGATCAGAACCTTCAATTGCACCGTCGAGGGCACAATCTACCGTGGAAGCTGAAACTCAGAACCACCACCGAAGTGAAAAAGCGCGTTTACGTTTGTCCAGAACCCTCCTGTGTCCACCACAACCCGGCTCGAGCGCTGGGCGATCTCACCGGCATTAAAAAGCACTTTAGTAGAAAGCACGGCGAGAAGAAGTGGAAATGTGAAAAATGTTCTAAGAAATACGCTGTTCATTCTGACTGGAAAGCGCATTCCAAAATATGTGGAACCAAGGAATACAAATGTGACTGTGGCACCATTTTTTCCAGAAGAGACAGTTTCATCACACACAGAGCTTTCTGCGATGCACTGAGTGATGACAGCAACAGGTTCAACGAAGCAGGACAACTGCAAAGTATAATGCATGGTTCAAACCTGCAACCACCAATGATCCCAAACCTAGCAGCATCACTACCAAACAATACCAACAATCACAAGCAACCATTACCACTCCCTCACGACCTCATTGCAGCAATTCCAGCTAAACCCTTTAACAGCAACATGGCAGCATTGCCGATAAGCCTTTCATCCACCTCTTCTCCCTCTCAACTGTGCTCAAACTCACCACACATCAACATGTTTGAGGAAAAGCCTCAAACAAACATGTCTGCCACGGCACTGCTTCAAAAAGCTGCGCAAATGGGCGCAGCAGTGAATGGTAACAGCAACAGCATGATGACTGAAACGGGCTTTGCTACAAGCATGGCACCACCGTCGTATGGGGTCATGAACCACCACATTCACCTCGGTCAACAAGACCTGTCTCAGTATAACTTCCATGCAAATGGGACGGTGATGATGGATGGTGGTGGCGGCAATGGCATGGGAGGAATGAGTGGTTTGGATATGTTTAATGCCATATTGGATCAAAGTAAGGCGTTGTCGAAGATCATAGAGCAGAACAACCGAAGCAGTTATAGTGGTGTTTTGCATGCAATGAATAATGGTAGGTCAAGTTCCATTGATGTTGGTGGAACTAAAGGGAGTGATCAGGATGTGATGACTTTGGACTTGTTGGGGATAGGAGGAGGAGTTGGTGGTGGTGATGGAAGTTTCTTTGGTGGTGAACAGTCTGAACTGAAGATTGAATATGGAGAAATGAGTCAAATAAGAATCCAGGCTTTGAACCATTTTCAGCAACAAACAGCAGCATATGAAAATTAA 1521 0.4596 MSNSNITSCDSWSFSTENTGEDAAAAAAALKHQQLEMLPQNHSPNSNTSTTTNNSNASNTNSQPPHKKKRNLPGNPDPNAEVVALSPNTLVATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKLRTTTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVHSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALSDDSNRFNEAGQLQSIMHGSNLQPPMIPNLAASLPNNTNNHKQPLPLPHDLIAAIPAKPFNSNMAALPISLSSTSSPSQLCSNSPHINMFEEKPQTNMSATALLQKAAQMGAAVNGNSNSMMTETGFATSMAPPSYGVMNHHIHLGQQDLSQYNFHANGTVMMDGGGGNGMGGMSGLDMFNAILDQSKALSKIIEQNNRSSYSGVLHAMNNGRSSSIDVGGTKGSDQDVMTLDLLGIGGGVGGGDGSFFGGEQSELKIEYGEMSQIRIQALNHFQQQTAAYEN 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01831 506 Coils Coil 494 506 - -
Vimu2g01831 506 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 44 484 IPR031140 -
Vimu2g01831 506 MobiDBLite consensus disorder prediction 1 20 - -
Vimu2g01831 506 Gene3D Classic Zinc Finger 92 119 - -
Vimu2g01831 506 MobiDBLite consensus disorder prediction 1 81 - -
Vimu2g01831 506 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Vimu2g01831 506 SUPERFAMILY beta-beta-alpha zinc fingers 95 192 IPR036236 -
Vimu2g01831 506 MobiDBLite consensus disorder prediction 36 68 - -
Vimu2g01831 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 118 IPR013087 -
Vimu2g01831 506 Pfam Zinc finger, C2H2 type 96 118 IPR013087 -
Vimu2g01831 506 SMART c2h2final6 96 118 IPR013087 -
Vimu2g01831 506 SMART c2h2final6 172 192 IPR013087 -
Vimu2g01831 506 SMART c2h2final6 137 167 IPR013087 -
Vimu2g01831 506 FunFam protein indeterminate-domain 5, chloroplastic-like 150 229 - -
Vimu2g01831 506 Gene3D Classic Zinc Finger 151 229 - -
Vimu2g01831 506 FunFam protein indeterminate-domain 12-like 75 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01831 Vimu-Chr2 13261172 13263911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01831 47 229 IDZ Gene Family AT5G66730 77.660 1.94e-107 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu2g01831 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01831 - - pvu:PHAVU_006G090800g 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01831 2 13261172 13263911 Vimu3g02085 3 35724885 35728284 ECH
Vimu2g01831 2 13261172 13263911 Vimu2g01831 2 13261172 13263911 ECH
Vimu2g01831 2 13261172 13263911 Vimu3g02085 3 35724885 35728284 PCT