Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01830 ATGGAGAAAATGGAAGAAGAAGATGATTATGAGGAGTATGTACCCGTGGCCAAACGTCGGGCCATTGAAGCTCAGAAGATTCTCCAACGCAAGGGGAAGGCCCCTTTGGCCACAGATGATGATTTGGAGAAATTGAGAGCGGCTGAATCGAAGCCTAGTCTGCTGGTTAAAGCTTCACAGATGAAAAGAGAACAACCCGAGATTAGTGTGACAGAGCAGATTGTTCAGCAGGAGAAGGAGATGATTGAAAACTTGTCAGATAGAAAAACCCTTATGTCTGTCCGTGAATTGGCTAAGGGAATCACTTATTCGGAACCTTTGCCAACAGGGTGGAAGCCACCTTTGCATGTAAGAAGGATGTCCAAGAAGGAGTGTGATTTGATTCGGAAGCAGTGGCATATAATAGTTGATGGTGGTGATATTCCGCCCCCAATTAAGAATTTTAAGGATATGAGATTTCCTGAGCCAGTTTTAAAGAAGTTGAAAGCTAAGGGGATTGTGCAACCAACACCTATTCAGGTGCAAGGACTTCCTGTAATCTTATCTGGGCGGGATATGATTGGGATTGCATTCACGGGCTCTGGAAAAACTCTTGTCTTTGTTCTACCGATGATCATGGTGGCAATGCAAGAGGAGATTATGATGCCTATTGTTCCTGGGGAAGGTCCTTTTGGTTTGATTATTTGCCCATCAAGGGAACTGGCTAGGCAGACTTACGAAGTCGTAGAACAATTCTTGATACCTTTGAAAGAAGCTGGATATCCGGAGCTGAGGCCTTTGCTTTGTATTGGTGGAGTGGATATGAGATCGCAGCTTGAGATTGTGAAGAAGGGTGTTCATATTGTTGTTGCCACTCCTGGGAGGTTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGACAACTGCAGGTATTTAACATTAGACGAGGCTGATCGGTTGGTGGATCTGGGGTTTGAAGATGACATTAGAGAAGTTTTTGATCACTTCAAAGCTCAGAGGCAGACTCTTCTATTTTCTGCAACCATGCCAACTAAAATTCAGAACTTTGCGAGGAGCGCTTTGGTGAAACCAATCATTGTCAACGTGGGACGTGCAGGGGCAGCAAATCTTGATGTAATTCAGGAGGTAGAATATGTTAAGCAGGAGGCAAAAATAGTTTATCTCCTTGAGTGCCTACAAAAAACCCCACCACCAGTTCTGATATTTTGTGAGAATAAAGCTGACGTTGATGACATCCATGAATACCTTCTCTTGAAAGGAGTGGAAGCAGTGGCGATCCACGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCCATTGCAGCTTTTAAGGCTGGCAAGAAAGATGTGTTGGTGGCAACTGATGTTGCATCCAAAGGTTTGGATTTTCCTGATATTCAGCACGTCATTAACTATGACATGCCAGCTGAAATTGAAAATTATGTCCATAGGATTGGCCGAACTGGTAGATGTGGGAAAACTGGTATAGCAACGACATTTATAAATAAGAATCAAAGTGAAACAACATTACTTGATTTGAAACACCTATTGCAAGAAGCAAAACAAAGGATTCCCCCAGTTTTGGCTGAGTTGAACGATCCAATGGAAGACAATGATGAAATCACAGGCATAAGTGGTGTCAAGGGATGTGCATATTGTGGTGGACTTGGTCATCGTATCAGAGATTGTCCCAAATTAGAACATCAGAAGAGCATGGCGATTGCAAATAATAGAAAGGATTATTTTGGATCTGGAGGTTACAGAGGGGAAATTTGA 1776 0.4302 MEKMEEEDDYEEYVPVAKRRAIEAQKILQRKGKAPLATDDDLEKLRAAESKPSLLVKASQMKREQPEISVTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYSEPLPTGWKPPLHVRRMSKKECDLIRKQWHIIVDGGDIPPPIKNFKDMRFPEPVLKKLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVVEQFLIPLKEAGYPELRPLLCIGGVDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIAAFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDNDEITGISGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRKDYFGSGGYRGEI 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01830 591 Gene3D - 114 365 IPR027417 -
Vimu2g01830 591 SUPERFAMILY Retrovirus zinc finger-like domains 549 570 IPR036875 GO:0003676|GO:0008270
Vimu2g01830 591 Coils Coil 503 523 - -
Vimu2g01830 591 CDD SF2_C_DEAD 373 501 - -
Vimu2g01830 591 Coils Coil 68 88 - -
Vimu2g01830 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 507 IPR027417 -
Vimu2g01830 591 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 177 361 IPR014001 -
Vimu2g01830 591 Gene3D - 371 533 IPR027417 -
Vimu2g01830 591 SMART c2hcfinal6 549 565 IPR001878 GO:0003676|GO:0008270
Vimu2g01830 591 FunFam Probable ATP-dependent RNA helicase DDX41 371 533 - -
Vimu2g01830 591 FunFam Probable ATP-dependent RNA helicase DDX41 113 362 - -
Vimu2g01830 591 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 146 174 IPR014014 GO:0003724
Vimu2g01830 591 CDD DEADc_DDX41 157 362 IPR044113 GO:0000398|GO:0003724|GO:0005524
Vimu2g01830 591 Pfam Zinc knuckle 549 565 IPR001878 GO:0003676|GO:0008270
Vimu2g01830 591 Pfam Helicase conserved C-terminal domain 385 492 IPR001650 -
Vimu2g01830 591 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 104 532 - -
Vimu2g01830 591 SMART helicmild6 411 492 IPR001650 -
Vimu2g01830 591 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 372 532 IPR001650 -
Vimu2g01830 591 Pfam DEAD/DEAH box helicase 170 349 IPR011545 GO:0003676|GO:0005524
Vimu2g01830 591 ProSiteProfiles Zinc finger CCHC-type profile. 550 565 IPR001878 GO:0003676|GO:0008270
Vimu2g01830 591 SMART ultradead3 165 376 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01830 Vimu-Chr2 13242380 13246372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01830 134 531 Eukaryotic Initiation Factors Gene Family AT3G19760 30.769 8.37e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01830 K13116 - gmx:100814127 1138.25