Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01823 ATGCAAGACATTTTCGGATCAGTTCGCAGATCACTGGTATTCCGCGGTTCGCCGGAGAGCGACGAGACATCTCTCGGAGTCGGAGGAAGCCTCGTCGATAAGATCAGTTATTGTATACGAACTTCCAGAGTCTTCTCCAAACCATCGCCGCCGTCGCCTTCGCCGTCTATTCCCGAGGACGCTGCGCCTCCGATCCGATGGCGGAAAGGCGAGTTGATCGGTTGCGGTGCCTTTGGCCAAGTCTACGTTGGAATGAATATCGATTCCGGAGAGCTTCTGGCGGTTAAACAGGTTTTGATTGCGGCGAGTAGTGCTTCGAAGGAGAAGGCACAGGCTCACATAAAAGAGCTAGAAGAAGAAGTTAAATTACTTAAAGACCTTTCACATCCAAACATTGTTAGATATTTGGGTACGGTCAGAGAAGAGGACACCCTAAATATTCTCTTGGAGTTTGTTCCAGGTGGATCCATATCATCGCTGTTGGGGAAGTTTGGGGCTTTCCCCGAGGCTGTGATAAGAACCTACACGAAGCAGCTACTACTTGGACTTGAATACTTGCACAAAAATGGAATCATGCACAGAGACATTAAGGGGGCCAATATTCTGGTAGATAATAAAGGGTGCATAAAACTTGCAGACTTTGGGGCATCCAAACAGGTCGTTGAGCTGGCAACCATTTCCGGGGCCAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATAGCTTCTCTGCGGACATATGGAGTGTGGGTTGTACCGTAATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACTAAGTCTCATCCACCAATCCCTGATCATCTTTCTGCTGCAGCAAAAGATTTTCTGCTTAAATGTTTGCAGAAGGAACCGGTCTTGAGGTCATCGGCATCAGAACTGCTGCAGCATCCCTTTGTAACTGGTGAACATATGAATTCTCTTACTTTGTCATCTAATGTCACGGAAAATTTTATAGCTTCATCACCATCATGTACCCCAAATGCTGAATCCATCCTTTGCTCTTCAACAGTAAATCCTCTGGACTCGGGAAATAAACCATTGTGGGGAATGAGCAATGATGATGATGATATGTGTGTGATTGACGACAAAGAAGAGTTCTCGCATAATAATGTTAAATACAAATCACCGATGTCAACTGATATTGAGAGTTTCAACCCAATGTCTGATCCCTCTGATGATTGGGGGTGTAAATTTGATGCAAGTTCAGAACTGGAAAATCGAGAGGTCAATTTTGTCACAGATGAAAATTACATGCCACCTGATCAGTCAGGGGATGATAAGGGGCAGCCAGATTTTTCCTTTCCAGGTGTCCCATCTCTTTCAGAGGAAGATGATGAACTCACAGAGTCAAAAATTAAAGCCTTTTTGGATGAGAAGGCTCTTGAACTGAAAAAACTACAGACACCTTTATATGAAGAGTTTTACAACAGTTTAAATACATCTTGTTCTCCCAATGTTGACAGGACAAGTGATGATACTGCTTCTCGAAAATTTTTGAAATTACCTCCTAAAAGCAGGTCACCTAATCGAGTACCAATCAGCACACCATCTAAAGCCATCGATAATACTGGAAGTCCTGGAAGTAATGGCCAGTCCTCATCTACTGTTGGCCATGTAAATAACCATACTTCTCAGGATATTCCAGCATCTCCCCTTAATGAATGGAAAGGAGTGATAGTTGACTCTCAGCAGCAGCCTAGTAGCCCAAGTCTAAGCTTTTCTGAGAGACAGAGGAAATGGAAAGAAGAGCTTGACCAGGAGCTTGAGAGAAAGCGAGAAATGATGCGTCAGGCTGGCATGGGCGGAAAGACATCTTCACCAAAGGATCGAGCTTTACATCGGCAGAGGGAACGAACAAGATTTGCTTCTCCCAGCAAATAA 1974 0.4488 MQDIFGSVRRSLVFRGSPESDETSLGVGGSLVDKISYCIRTSRVFSKPSPPSPSPSIPEDAAPPIRWRKGELIGCGAFGQVYVGMNIDSGELLAVKQVLIAASSASKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSAAAKDFLLKCLQKEPVLRSSASELLQHPFVTGEHMNSLTLSSNVTENFIASSPSCTPNAESILCSSTVNPLDSGNKPLWGMSNDDDDMCVIDDKEEFSHNNVKYKSPMSTDIESFNPMSDPSDDWGCKFDASSELENREVNFVTDENYMPPDQSGDDKGQPDFSFPGVPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTSCSPNVDRTSDDTASRKFLKLPPKSRSPNRVPISTPSKAIDNTGSPGSNGQSSSTVGHVNNHTSQDIPASPLNEWKGVIVDSQQQPSSPSLSFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKDRALHRQRERTRFASPSK 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01823 657 Coils Coil 100 127 - -
Vimu2g01823 657 MobiDBLite consensus disorder prediction 508 657 - -
Vimu2g01823 657 MobiDBLite consensus disorder prediction 638 657 - -
Vimu2g01823 657 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 55 337 - -
Vimu2g01823 657 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Vimu2g01823 657 SMART serkin_6 67 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01823 657 MobiDBLite consensus disorder prediction 606 628 - -
Vimu2g01823 657 MobiDBLite consensus disorder prediction 539 581 - -
Vimu2g01823 657 MobiDBLite consensus disorder prediction 588 605 - -
Vimu2g01823 657 MobiDBLite consensus disorder prediction 445 476 - -
Vimu2g01823 657 CDD STKc_MAPKKK 66 330 - -
Vimu2g01823 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Vimu2g01823 657 SUPERFAMILY Protein kinase-like (PK-like) 66 331 IPR011009 -
Vimu2g01823 657 ProSiteProfiles Protein kinase domain profile. 67 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01823 657 Coils Coil 608 628 - -
Vimu2g01823 657 FunFam Serine/threonine-protein kinase STE11 63 157 - -
Vimu2g01823 657 Pfam Protein kinase domain 68 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01823 657 Gene3D Transferase(Phosphotransferase) domain 1 66 359 - -
Vimu2g01823 657 FunFam Mitogen-activated protein kinase kinase kinase 2 66 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01823 Vimu-Chr2 13155244 13161719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01823 1 657 MAP Kinase Kinase Kinase AT1G54960 56.652 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vimu2g01823 Pkinase 8.6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01823 K20606 - gmx:100807537 1150.58