Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01809 ATGATGAATTTAAAACCTACTGCTCCTCCTTCAAGAGTTGTCGCTGCACCACTTCCGGTATCTAATGGCTCTACTCCATCTGCTGTTAAAACACACATATGTAACAAGTTCAATACTGCCAAAGGATGCAAATTTGGTGACAAGTGCCATTTTGCTCATGGTGAATGGGAACTTGGTAAACCTATTGCTCCCTCAATTGATGATCATCGATCTTTGGGACCTTCATCAGCTGGTCGAATGGCTGGTCGAATTGAGCCTCCTCCCTTGGCTGGGAGCTTTGGTGCCATTTCTACTGCCAAGATCAGTGTAGAAGCTTCTCTGGCAGGAGCTATCATTGGGAAGGGTGGTGTGAACTCAAAGCAGATCTGTCGCCAAACAGGAGCAAAACTTTCAATCCGAGAGCATGAAACTGATCCAAACCTTAGAAACATTGAACTCGAGGGGACTTTCGAACAGACAAAGGAGGCAAGTAATATGGTGGATTGA 486 0.4527 MMNLKPTAPPSRVVAAPLPVSNGSTPSAVKTHICNKFNTAKGCKFGDKCHFAHGEWELGKPIAPSIDDHRSLGPSSAGRMAGRIEPPPLAGSFGAISTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHETDPNLRNIELEGTFEQTKEASNMVD 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01809 161 Gene3D - 21 60 - -
Vimu2g01809 161 Pfam KH domain 99 160 IPR004088 GO:0003723
Vimu2g01809 161 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 30 55 IPR000571 GO:0046872
Vimu2g01809 161 SMART kh_6 95 161 IPR004087 GO:0003676
Vimu2g01809 161 SMART c3hfinal6 28 55 IPR000571 GO:0046872
Vimu2g01809 161 ProSiteProfiles Type-1 KH domain profile. 96 160 - -
Vimu2g01809 161 CDD KH-I_AtC3H36_like 99 160 - -
Vimu2g01809 161 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 85 160 IPR036612 GO:0003723
Vimu2g01809 161 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 74 160 - -
Vimu2g01809 161 FunFam Zinc finger CCCH domain-containing protein 23 60 - -
Vimu2g01809 161 Gene3D K Homology domain, type 1 93 161 IPR036612 GO:0003723
Vimu2g01809 161 ProSiteProfiles Zinc finger C3H1-type profile. 28 56 IPR000571 GO:0046872
Vimu2g01809 161 SUPERFAMILY CCCH zinc finger 26 59 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01809 Vimu-Chr2 13086326 13086811 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu2g01809 KH_1 1.8e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01809 - - pvu:PHAVU_007G259300g 301.982