Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01794 ATGACCAACAATAACACTCTTTTAAATAACACAAACAACATACCCTTTGTCTCACTGTCTTCATTCGACAAGATGATGAAACACCATCATCACGCACCCCTATTCCTCCTCCTCCTCCTGGTGGTGGTGGTGGCGTCAATTCCAATCGCCGTCGCGCAGTCCCAGCCCTCGCCCAGTGAATTCACCGACTCAAGACTAAACAGTTTCAACCCCTCTCTAGCCGCAATAATCGTCATATTAGTGGCGGCGCTTTTCGTCATGGCCGTTTTCTCCGTCTACGTACGCCACTGCGCCGATACGCCTTCCAACAGCGTTAGGCCTCTCACGTCCGCACGCTCCAGAAGAGCCGCGCGTGGCCTTGATCCCGCCGTCATCCAAACCTTCCCCATCCTCGAATACTCCGAGGTCAAGATCCACAAGATCGGAAAAGAACCCTTGGAATGCGCGGTGTGTTTGTGCGAGTTTGAAGACACCGAAACGCTGCGTTTGATCCCCAAGTGCGACCACGTTTTCCACCCCGAGTGCATAGACGAGTGGTTGAGCTCCCACACCACGTGTCCCGTGTGCCGCGCCAATCTCGTACCGACAGAATCACAGGAATCTGATGTCAACAACGGTGTTGCCGCTGTTCCCGATCCCCAAATGTTAACGACGGACCTTGAAGCACAAAACGACGACGTAGAAGCCGCACCAGAGCAGCAAAACGCGGACTCTGATCGTTTCTTGACTGAACCGGAAGTTCTTTCTCTGGAGAAAACGCTGAACCGGAACCGCACGCGTAGATCGCGGTCGAACCGGCCTCGCCTGTTCTCGAAGTCGCACTCGACTGGGCACTCGATCGTCCAACCGGGAGAAAATACGGACCGGTTCACTCTGAGACTTCCTTTGGAGGTTCGCAAGCAACTAATAAACCGGCAATTGCATCGAGCAAGTAGCTTGATCGTGTTACCGAGGGAAGGTAGTTCGAGGCGGGGTTACCGAACCGGAGGAGAAGGGAGTAGTCGGGGGAAACAATCGAGGCGGTTGGACCGGAGTTTGAAATCGGACCGATGGATTTTCTCAGTAGCTGCGCCGTTTTTCGCTAGGGCGCTGTCTATTAGGTCCCCCAGGGTGCGGAACAACGATGTTGATAGAATGTCGTCGTCATCCACCGCGCCGATTATGCCGCCGACGGCCGTTGACTCGGCTCGGCCACCGGTTTAA 1203 0.5461 MTNNNTLLNNTNNIPFVSLSSFDKMMKHHHHAPLFLLLLLVVVVASIPIAVAQSQPSPSEFTDSRLNSFNPSLAAIIVILVAALFVMAVFSVYVRHCADTPSNSVRPLTSARSRRAARGLDPAVIQTFPILEYSEVKIHKIGKEPLECAVCLCEFEDTETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVPTESQESDVNNGVAAVPDPQMLTTDLEAQNDDVEAAPEQQNADSDRFLTEPEVLSLEKTLNRNRTRRSRSNRPRLFSKSHSTGHSIVQPGENTDRFTLRLPLEVRKQLINRQLHRASSLIVLPREGSSRRGYRTGGEGSSRGKQSRRLDRSLKSDRWIFSVAAPFFARALSIRSPRVRNNDVDRMSSSSTAPIMPPTAVDSARPPV 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01794 400 MobiDBLite consensus disorder prediction 320 342 - -
Vimu2g01794 400 MobiDBLite consensus disorder prediction 375 389 - -
Vimu2g01794 400 SMART ring_2 148 189 IPR001841 -
Vimu2g01794 400 FunFam E3 ubiquitin-protein ligase ATL6 108 196 - -
Vimu2g01794 400 Pfam Ring finger domain 147 190 IPR001841 -
Vimu2g01794 400 MobiDBLite consensus disorder prediction 227 284 - -
Vimu2g01794 400 SUPERFAMILY RING/U-box 141 196 - -
Vimu2g01794 400 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Vimu2g01794 400 CDD RING-H2_EL5-like 147 190 - -
Vimu2g01794 400 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 54 280 - -
Vimu2g01794 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 196 IPR013083 -
Vimu2g01794 400 MobiDBLite consensus disorder prediction 269 284 - -
Vimu2g01794 400 MobiDBLite consensus disorder prediction 374 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01794 Vimu-Chr2 12975077 12977643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01794 36 363 Rapid Response to Elicitors AT3G05200 44.543 2.31e-86 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01794 K10664 - gmx:100781706 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01794 2 12975077 12977643 Vimu2g01794 2 12975077 12977643 ECH
Vimu2g01794 2 12975077 12977643 Vimu3g02116 3 36042469 36044579 PCT