Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01791 ATGTGTTTATCTGAGGGAGAGAGAGGCATGGCTCTAGAAGCTGTAGTGTATCCCCAACCCCAGGACCCGTTTGGCTCTGCAATCAAAGACCTATACAGCTACAACAACATGTTAGAAGCTGCTGCAGCAAACTGGGGTTATGGAGATTTCACCCTTGACAACCAAACAGAGAATTACTCCTATGGAGAATGGAACTCTTCTCCTCCCTCTTTGTTGCCTCACACCATCAATGCATCAAATCCTCCTTCTTCAGAAACCAGCAACACGCAGAACAACTTAGATACTTCGGTTTCCACCCCAGCTCGCCCCAAACGGCGCAGAACCAAAAGCAGGAAGAATAAGGAAGAGATTGAGAACCAGAGAATGACCCACATTGCTGTAGAACGCAACAGAAGGAAGCAGATGAACGAGTACCTCTCTGTTCTTCGCGCTCTAATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCTATTATTGGGGGTGCTATAAACTTTGTGAAGGAGCTTGAGCAGAGGCTGCAATTTCTTGGTGCTCAGAAAGAGAAAGAGGGGAAACCTGATGTACCCTTTTCTGAGTTTTTCTCATTTCCTCAGTACTCAACAAGTGCCAGTGGTGGCTGTGATAACTCTGCAGCCATGAGCGACCAAAAGGGCGAGGTTCAGTCTGGCATTGCTGACATAGAAGTGACAATGGTAGAGAGCCATGCAAATCTCAAAATAAGATCCAAGAAACGACCAAAGCAGCTCTTGAAAATAGTATCTAGTTTGCATGGCATGCGTCTCACAATCTTGCACCTAAACGTTACCACAACTGGGGAAATTGTCCTCTATTCTCTCAACGTCAAGGTTGAAGAAGATTGCAAGCTTGGATCAGTGGACGAGATAGCTGCAGCTGTATACGAAATGCTGAACAGAATCCAACAAGAATGA 933 0.4587 MCLSEGERGMALEAVVYPQPQDPFGSAIKDLYSYNNMLEAAAANWGYGDFTLDNQTENYSYGEWNSSPPSLLPHTINASNPPSSETSNTQNNLDTSVSTPARPKRRRTKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRALMPESYVQRGDQASIIGGAINFVKELEQRLQFLGAQKEKEGKPDVPFSEFFSFPQYSTSASGGCDNSAAMSDQKGEVQSGIADIEVTMVESHANLKIRSKKRPKQLLKIVSSLHGMRLTILHLNVTTTGEIVLYSLNVKVEEDCKLGSVDEIAAAVYEMLNRIQQE 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01791 310 Gene3D - 105 185 IPR036638 GO:0046983
Vimu2g01791 310 CDD bHLH_AtFAMA_like 122 193 - -
Vimu2g01791 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 170 IPR011598 GO:0046983
Vimu2g01791 310 MobiDBLite consensus disorder prediction 61 118 - -
Vimu2g01791 310 Pfam Helix-loop-helix DNA-binding domain 120 171 IPR011598 GO:0046983
Vimu2g01791 310 PANTHER MAX DIMERIZATION, MAD 59 309 - -
Vimu2g01791 310 SMART finulus 125 176 IPR011598 GO:0046983
Vimu2g01791 310 MobiDBLite consensus disorder prediction 61 99 - -
Vimu2g01791 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 183 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01791 Vimu-Chr2 12930472 12931733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01791 10 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.771 1.55e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu2g01791 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01791 - - gmx:100777413 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01791 2 12930472 12931733 Vimu2g01791 2 12930472 12931733 ECH
Vimu2g01791 2 12930472 12931733 Vimu3g02117 3 36077988 36079212 PCT