LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu2g01770	ATGGTTCATTTTCTGAGTAGGGTTTTTGTTGTTGTTATTGTGCAGTCGAGGAGAAAGGTTAGAGAGCCAAAAGAAGAAAATGTGACTCTGGGTCCAGCCGTTAGAGACGGTGAGCATGTCTTTGGCGTCGCTCGCATCTTTGCCTCCTTCAATGACACCTTCATTCATGTCACTGATTTGTCTGGAAGGGAAACACTTGTCCGTATCACTGGTGGGATGAAGGTTAAAGCTGATAGAGATGAATCTTCTCCCTATGCTGCTATGCTTGCAGCACAGGATGTTGCTGCCAGATGCAAGGAGTTAGGCATAACTGCTCTTCATATCAGGCTCCGAGCCACTGGTGGAAACAAGACAAAGACACCTGGTCCTGGCGCTCAATCAGCTCTTAGAGCCCTTGCTCGTTCAGGAATGAAAATTGGTCGCATAGAGGATGTGACTCCCATTCCTTCTGACAGCACGCGTAGAAAGAGTGGAAGGAGAGGTAGAAGGCTTTAA	495	0.4747	MVHFLSRVFVVVIVQSRRKVREPKEENVTLGPAVRDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIRLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL	164

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu2g01770	164	SUPERFAMILY	Translational machinery components	37	162	-	-
	Vimu2g01770	164	MobiDBLite	consensus disorder prediction	144	164	-	-
	Vimu2g01770	164	PIRSF	RPS11p_RPS11a_RPS14e_RPS11o	12	161	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Vimu2g01770	164	ProSitePatterns	Ribosomal protein S11 signature.	129	151	IPR018102	-
	Vimu2g01770	164	Pfam	Ribosomal protein S11	42	160	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Vimu2g01770	164	FunFam	40S ribosomal protein S14	15	164	-	-
	Vimu2g01770	164	PANTHER	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	17	157	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Vimu2g01770	164	Hamap	30S ribosomal protein S11 [rpsK].	17	161	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Vimu2g01770	164	Gene3D	Ribosomal protein S11	15	164	IPR036967	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu2g01770	Vimu-Chr2	12742501	12744160	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu2g01770	16	153	Cytoplasmic Ribosomal Protein Gene Family	AT3G52580	89.855	4.40e-91	260

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu2g01770	K02955		-	gmx:100306566	266.159