Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01764 ATGGTTCCAATTGGTCATGTTTCTGATGACAAGCAGAAAATACGAGGCATTGTGTTTTCTAACCCTGCTTCTGCCCAATGCTTTTTTCTCTTCCACCAACCTTTCCCTGTGATGAAAATGTTAGATTTTTATTTTTCTCTTGCAGACTCAGGAGAAATCGTTTTGGAGGAGCAGAAAAGTGTGGTAACTCTAAGAGAACTCTTGGAAGAATGCATTAGTGACACTGAGAAATCTCATCAACCACCTGAATTAGCTGGTGGTAATCCAAGGTCAACGACTGAGATTCACCGGAGGAAGTTACTCAGACCATGCAGAATGAGATCAATTGAGCACCTACCATCTTTTCCTCCAAGTTGTTTGTCAAAAATAACAAAGCCTAAAAGCAAAAGCATTGGAAAAAACACTATTCGATGTAATCCACAAAGTTCCAGAACTTTGGTGAATTTCAGTCTTTCTGACCTGAGAAATGCAACCAACAATTTTAGCAATGAGAATATTATTGGAAGAGGTGGTTATGCTTATGTTTACAAGGGAAGCCTGCAAAATGGGCAACTAATAGCAGTTAAGCAACTGAGTAGAGGGACTCCAGAAGACAGGATATCAGTTCTTCTATCTGAGCTAGGAATTCTTTCTCATGTTGACCACCCCAATACTGCCATGCTTATTGGATTTGGAGTTGAAGGGGGAATGTACCTTGTGTTTCAATTATCTCCTCTGGGAAATTTAGGATCTCTTCTTCATGCAGATGGCCTCCTCTATCTTCATGAGATTTGTCATAGGCGAATCATTCATAGAGATCTTAAATCAGATAACATTCTGCTCACTGAGAATTTTGAGCCGCAGATTATAACAGGACGTCGTGCTTTGGATCATTTGAAAGAAAGTATTATGCTATGGGCAAAGCCTTTATTGGAAGCTAATAATATTAAGGAGCTTGTTGATCCTTCTCTGGGTGATGATTATGACTGGGAACAAATGGAACGTGTAGTTTTGACTGCATCTCTGTGTGTTGAGCAGTTTCCTATCTTACGCCCCAGCATGAGTCAGATTGCAATACTGCTAAGAGGTGATGACTATGTCATGGAACATACTGAGAGGAGAAACAAGATGCACAAGAATACAACTCAAGGAGCTATCTAA 1140 0.4 MVPIGHVSDDKQKIRGIVFSNPASAQCFFLFHQPFPVMKMLDFYFSLADSGEIVLEEQKSVVTLRELLEECISDTEKSHQPPELAGGNPRSTTEIHRRKLLRPCRMRSIEHLPSFPPSCLSKITKPKSKSIGKNTIRCNPQSSRTLVNFSLSDLRNATNNFSNENIIGRGGYAYVYKGSLQNGQLIAVKQLSRGTPEDRISVLLSELGILSHVDHPNTAMLIGFGVEGGMYLVFQLSPLGNLGSLLHADGLLYLHEICHRRIIHRDLKSDNILLTENFEPQIITGRRALDHLKESIMLWAKPLLEANNIKELVDPSLGDDYDWEQMERVVLTASLCVEQFPILRPSMSQIAILLRGDDYVMEHTERRNKMHKNTTQGAI 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01764 379 ProSitePatterns Protein kinases ATP-binding region signature. 167 189 IPR017441 GO:0005524
Vimu2g01764 379 Gene3D Phosphorylase Kinase; domain 1 122 235 - -
Vimu2g01764 379 PANTHER OS08G0249100 PROTEIN 82 282 IPR046958 -
Vimu2g01764 379 Pfam Protein kinase domain 162 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01764 379 Gene3D Transferase(Phosphotransferase) domain 1 283 376 - -
Vimu2g01764 379 Gene3D Transferase(Phosphotransferase) domain 1 240 282 - -
Vimu2g01764 379 SMART serkin_6 161 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01764 379 SUPERFAMILY Protein kinase-like (PK-like) 145 354 IPR011009 -
Vimu2g01764 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Vimu2g01764 379 ProSiteProfiles Protein kinase domain profile. 161 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01764 Vimu-Chr2 12694242 12697371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01764 146 357 Receptor kinase-like Gene Family AT1G60800 30.479 9.60e-31 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vimu2g01764 Pkinase 4.3e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01764 - - gmx:113001177 328.561