Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01753 ATGGGTAGTGCTAACCAGGTGTTGAACATTTGTGCTCCAATCACAAATGAACAACAATCTGTATCTGTTGAGCAGATCGTGAATAACATGAATCATGCAAAGGTAGAAGGTGCTGATACAGTAGAGGAAGCTTCTTATCTTCCTACCTTGCTGGAACATAAGAGAAATCATAACAGTCATGGAAAAATAATCGTTTCTTGCCATGTGGATGAAATCACCCCTCCGCAAGAAGAACTCCTTCAACTTGTTGCACGCATGCAAGCAACTGGATCAGATATCATCAAACTTGTTACACATGCAGCTGATATAACAGAACTCACAAGAATATTTAGCTTGTTTCCTCATTGGCCAGCAGGAGAAATCTTATTCTCTTGGTTTGTTCAGTGTGGAATAAAAATGATTTTTGTGAAGGGTGCTTCTGATGTACCATTGATTGCTTACTCTGTTGGAGAAAGAGGACTTATAAGCCAGCTTCTATGTCCAAAATTTGGAGGGTTCTTTGTATATGGATCATTGGCAGGAAATCCAATCCCTGGTATCCCTTCTCTTGACAGTCTCAAGGAAGCCTATAAATTGGAGGATGTCAATGAAGATACTAAAGTTTTTGGGCTGATCTCAAAACCAGTTAGCCACAGCAAAGGCCCTATATTGCATAATCCTTCCTTCAGACATGTAAACTACAATGGAATCTATGTCCCCATGTTTGTTGACGATCTAAAAGAGTTCTTTAGCACCTATTCAAGCCCTGATTTTTCTGGTTTTAGTGTTGGGATTCCATATAAGGAAGAAGTTCTAAGGTTTTGTGATGAAGTCCATCCGCTTGCTCAGTCTATAGGAGCTGTTAATACTATCATAAGAAGACCAGGAGATGGGAAGCTTGTTGGTTACAATACAGATTGTGAGGCTGCAATTACTGCAATTGAGGATGCACTCATTGAACATGGTTGCAATGATGGTGGAGCATCTTTAGGTTCAGCCCTTGCTGGTCGATTGTTTGTGCTAGTTGGTGCGGGAGGTGCAGGGAAAGCACTTGCATTTGGTGCTAAAAGCAGAGGAGCTCGTCTAGTGATATTTGACATTGATTTTGACAGAGCAAAATCTCTTGCCTGTGCTGTATCTGGTGAGGCTCAGCCTTACAAAGAGTTGGTGAACTTTGAGCCAGAGAAAGGGGCAATTCTTGCAAATGCAACACCTATAGGAATGCATCCAAATACTGACAGAATTCCGGTGGCAGAGTCAACTTTGGAACATTACTTGTTAGTCTTCGATGCTGTATATACACCAAGAAGAACAAGATTATTGAAGGAAGCAGATGCTGCAGGAGCAAAAACTGTGGGTGGGGTAGAAATGTTCCTAAGGCAGGCTATTGGTCAGTTTAATCTTTTCATGGGCTTAGAAGCTCCTATAGAATTTATGAGAGAAATTGTTTTATCCAAGTTTTGA 1443 0.4096 MGSANQVLNICAPITNEQQSVSVEQIVNNMNHAKVEGADTVEEASYLPTLLEHKRNHNSHGKIIVSCHVDEITPPQEELLQLVARMQATGSDIIKLVTHAADITELTRIFSLFPHWPAGEILFSWFVQCGIKMIFVKGASDVPLIAYSVGERGLISQLLCPKFGGFFVYGSLAGNPIPGIPSLDSLKEAYKLEDVNEDTKVFGLISKPVSHSKGPILHNPSFRHVNYNGIYVPMFVDDLKEFFSTYSSPDFSGFSVGIPYKEEVLRFCDEVHPLAQSIGAVNTIIRRPGDGKLVGYNTDCEAAITAIEDALIEHGCNDGGASLGSALAGRLFVLVGAGGAGKALAFGAKSRGARLVIFDIDFDRAKSLACAVSGEAQPYKELVNFEPEKGAILANATPIGMHPNTDRIPVAESTLEHYLLVFDAVYTPRRTRLLKEADAAGAKTVGGVEMFLRQAIGQFNLFMGLEAPIEFMREIVLSKF 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01753 480 Pfam Shikimate 5'-dehydrogenase C-terminal domain 447 477 IPR041121 -
Vimu2g01753 480 CDD NAD_bind_Shikimate_DH 298 464 - -
Vimu2g01753 480 Hamap Shikimate dehydrogenase (NADP(+)) [aroE]. 199 478 IPR022893 GO:0004764
Vimu2g01753 480 Gene3D - 297 478 - -
Vimu2g01753 480 FunFam Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 297 479 - -
Vimu2g01753 480 Gene3D Leucine Dehydrogenase, chain A, domain 1 199 296 - -
Vimu2g01753 480 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 195 298 IPR046346 -
Vimu2g01753 480 FunFam Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 199 296 - -
Vimu2g01753 480 CDD DHQase_I 44 192 IPR001381 GO:0003855
Vimu2g01753 480 Gene3D Aldolase class I 43 195 IPR013785 -
Vimu2g01753 480 SUPERFAMILY Aldolase 50 191 - -
Vimu2g01753 480 PANTHER SHIKIMATE DEHYDROGENASE 53 474 IPR022893 GO:0004764
Vimu2g01753 480 Pfam Type I 3-dehydroquinase 53 190 IPR001381 GO:0003855
Vimu2g01753 480 Pfam Shikimate dehydrogenase substrate binding domain 204 284 IPR013708 GO:0004764
Vimu2g01753 480 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 324 478 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01753 Vimu-Chr2 12590791 12598077 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01753 K13832 - gmx:100788604 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01753 2 12590791 12598077 Vimu2g01753 2 12590791 12598077 ECH
Vimu2g01753 2 12590791 12598077 Vimu3g01350 3 24932901 24935764 PCT