LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu2g01740	ATGGGGTGTGTGCTTAGCAGGGAGGTGTCGAAGGGGATAATCTCTGAGGTGAAGGAGGAGAAGGGTTTGAGTGGTCAGAGTAAGAGGAAGGTTGATGGAGTGTCGGGGAGCAAGAGTGAGGTTGTGGTAGAGGTTCAGAATGGCGAGGAGAAGGAGAAGGAGAAGGGTGGTGGTGAAGGGGTGCAACGGCCTCGGGGAGAAAGGAGGAGATCGAAGACGAATCCGAGACTGAGCAATCTGCCCAAACATTTGCGGGGTGAGCAGGTTGCTGCCGGATGGCCGCCGTGGCTCACTGCAGTGTGTGGGGAAGCACTCAGTGGCTGGATTCCGCGAAAGGCAGACACCTTTGAGAAAATTGATAAGATTGGACAAGGAACTTATAGTAATGTGTACAAAGCTAAAGACACAATGACGGGTAAAATTGTTGCCCTAAAGAAGGTTCGTTTTGACAATTTAGAACCTGAGAGTGTAAAATTCATGGCGAGAGAGATTCTTATTTTGCGAAGGTTGGACCATCCCAATGTTGTAAAGTTGCAAGGTTTAGTTACGTCAAGGATGTCCTGTAGTTTGTATTTGGTGTTCGATTACATGGATCATGATTTGGCTGGACTTGCTGCAAGCCCAGGAATCAGATTCACAGAGCCTCAGGTAAAATGTTACATGCATCAGCTGCTATCAGGACTTGAGCACTGTCATAGCCGTCATGTACTTCACCGTGATATTAAAGGGTCAAATCTTCTTATTGACAATGAAGGAACACTTAAGATTGCCGACTTTGGATTGGCTTCTATTTTTGATCCAAACCATAAGCATCCAATGACTAGTCGTGTAGTAACCCTTTGGTATCGACCTCCTGAGCTTCTCCTTGGTGCCACAGATTATAGTGTGGGTGTAGACCTCTGGAGTGCTGGATGTATTTTAGGAGAATTATTGGCTGGGAAACCAATCATGCCTGGTCGCACAGAGGTGGAACAACTGCACAAGATATACAAACTATGTGGTTCACCTTCGGATGAGTATTGGAAGAAGTCAAAGTTGCCTAATGCTACTTTGTTTAAACCACGAGAGCCGTACAAGAGGCGCATAAGAGATACTTTTAAAGATTTTCCACCTTCTGCTCTACCCCTCATTGATACACTTCTCGCAATTGATCCTGCAGAACGGGAAACTGCCTCGGATGCTTTGAGAAGTGAGGTGAGGTTTCTCAAAATTCCAGATCTTCTTGTTGTTAAAATGCTGTTCTTTACCACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAATATCCCCCAAGCAAGGAAATGGATGCTAAACGAAGGGATGATGAAATGAGGAGACAAAGAGCTGCGGGCAAAGCTCAGGCTGATGGCCCTAAGAAGCATCGTAATCGTGATCGTGGTACAAAAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTACAATCGAATATTGATAGAAGAAGGCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATCAAGATGGACAACTTGGTTTTCCTTTGGGTTCTTCCCATCATATTGATCCGGATACTGTTCCAACTGATGTCTCCTTCACATCAACCTCTTATACCTATTCAAAGGAACCATTCCAAGCTTGGTCTGGTCCCATTGGCAATGCTGCTGACATTGGAGTACCAAAGCGGAAGAAACACACTGCAGGTGATGCATTGGATTTATCAAAACCACAGAAAGATTCTCTCAAGGACAAGATTAAAGGAAAGAAAATCATAGCTTAG	1782	0.4512	MGCVLSREVSKGIISEVKEEKGLSGQSKRKVDGVSGSKSEVVVEVQNGEEKEKEKGGGEGVQRPRGERRRSKTNPRLSNLPKHLRGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDTMTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMDHDLAGLAASPGIRFTEPQVKCYMHQLLSGLEHCHSRHVLHRDIKGSNLLIDNEGTLKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYSVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRRIRDTFKDFPPSALPLIDTLLAIDPAERETASDALRSEVRFLKIPDLLVVKMLFFTTEPYACDPSSLPKYPPSKEMDAKRRDDEMRRQRAAGKAQADGPKKHRNRDRGTKAFPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGQLGFPLGSSHHIDPDTVPTDVSFTSTSYTYSKEPFQAWSGPIGNAADIGVPKRKKHTAGDALDLSKPQKDSLKDKIKGKKIIA	593

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu2g01740	593	Gene3D	Phosphorylase Kinase; domain 1	103	198	-	-
	Vimu2g01740	593	MobiDBLite	consensus disorder prediction	433	470	-	-
	Vimu2g01740	593	MobiDBLite	consensus disorder prediction	425	488	-	-
	Vimu2g01740	593	FunFam	probable serine/threonine-protein kinase At1g54610	103	198	-	-
	Vimu2g01740	593	SMART	serkin_6	116	402	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu2g01740	593	ProSiteProfiles	Protein kinase domain profile.	116	402	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu2g01740	593	MobiDBLite	consensus disorder prediction	559	593	-	-
	Vimu2g01740	593	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	236	248	IPR008271	GO:0004672\|GO:0006468
	Vimu2g01740	593	Gene3D	Transferase(Phosphotransferase) domain 1	199	455	-	-
	Vimu2g01740	593	FunFam	probable serine/threonine-protein kinase At1g54610	199	455	-	-
	Vimu2g01740	593	ProSitePatterns	Protein kinases ATP-binding region signature.	122	145	IPR017441	GO:0005524
	Vimu2g01740	593	MobiDBLite	consensus disorder prediction	544	593	-	-
	Vimu2g01740	593	CDD	STKc_CDK9_like	116	398	-	-
	Vimu2g01740	593	SUPERFAMILY	Protein kinase-like (PK-like)	111	397	IPR011009	-
	Vimu2g01740	593	MobiDBLite	consensus disorder prediction	16	83	-	-
	Vimu2g01740	593	MobiDBLite	consensus disorder prediction	44	74	-	-
	Vimu2g01740	593	PANTHER	CELL DIVISION PROTEIN KINASE	114	399	-	-
	Vimu2g01740	593	Pfam	Protein kinase domain	116	397	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu2g01740	Vimu-Chr2	12483700	12487829	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu2g01740	108	455	Core Cell Cycle Gene Families	AT5G10270	50.824	7.42e-121	365

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Vimu2g01740		Pkinase	5.6e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu2g01740	K08819		-	gmx:100786837	1053.12