Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01730 ATGGCCGCATCATCATCTTCTTCTTCTTTGAACTTTACAGTGCGAAGGTGCCAACCCCAGCTGGTGCCTCCTGCTATCCCTACTCCTCATGCATTTAAACCACTTTCCGACATTGATGATCAAGATGGTTTGCGTTTCCACACTCCGATGATACAAATTTATAAAAAGCAAGCATCAATGGTAGAGAAAGACCCAGTTCAAGTCATTCGCCAAGCACTCTCCCAGACACTTGTTTTCTATTACCCATTTGCGGGTAGGCTCATAGAGGGGCCTAACCGCAAATTGATGGTGGATTGCACCGGAGAAGGTGCCATGTTCGTTGAGGCAGATGCTGACGTCACACTCCATCAGTTCGGCGATTCTCTCCAGCCTCCATTCCCATGCTTCCATGAACTGCTATACGATGTCCCTGGCACACAACAAATTACCAACACTCCCCTTCTACTTGTACAGTTAACTTTAGAAAAAGTTAGCGGAAGCAAAATGCTTGAACTTGTTGAATATGGAATAAAAATGCAGGTGACACGACTCCAGTGTGGTGCTTTCATCTTAGCCATCGGCCTCAACCACACCATCTGTGATGCACCCGGTTACAAACAATTCATGAGCGCGTGGGCGGAAATGGCTAGAGGTGCAACCAAACCTTCCATTGCACCAGTGTGGCGTAGGGATCTCCTAATAGCAAGAGACCCACCTCGCATTACATGCAACCATCGTGAATTCGACCAAGTCCAACATACCCTTCCTTCTTCAGACGAAAACTTGGTTCAACGATCATTCTTCTTTGGACCACTCGATATAGCTGCACTGCGGCGCTTGATTCCCCAACACCAGCACTGCACCACATTTGATCTCATCACAGCATGCCTCTGGCGCTGTCGCACAAAAGCACTGCAGATAGAGACAGACGAGGATGTTAGCATGATGTGCATAGTCAACGGACGTGGTCGGTTTAACCCTCCACTTCCTGTTGGTTACTACGGCAACGCTTTTGCATATCCGGCGACAGTAACAACTGCAGGGAAGCTATGCAGAAAGCCATTTGGTTATGCGGTGGAATTGATAAATAAAGTGAAAGGTGAGATGACAGAAGAGTACCTACAATCTGTTGCAGACCTGATGGTGATGAAGGGACGATGCTTATTCACAACTGTGAGGTCTTGTATTGTGTCATCTTTGGCACGTTTTAACCTTAGAGAAGTGGATTTTGGTTGGGGTGAGGCTGTGTACGGTGGAGTGGCCCAAGCTGGGGCTGGAAGGTTCTTAGGAGTTTCGTATTTCTGTTCTGCTAAGAATGGAAAAGGAGAAGAAGGCATAATATTTCCGATTTGGTTACCTGCTGAAGCTATGGAGAGGTTTGCTGAAGAGTTTAACCTCATGCTAGGCAACAAAAACCAACCACAAACCAGGTCTGCTACTTTTATAATGTCTACCCTCTAA 1440 0.4674 MAASSSSSSLNFTVRRCQPQLVPPAIPTPHAFKPLSDIDDQDGLRFHTPMIQIYKKQASMVEKDPVQVIRQALSQTLVFYYPFAGRLIEGPNRKLMVDCTGEGAMFVEADADVTLHQFGDSLQPPFPCFHELLYDVPGTQQITNTPLLLVQLTLEKVSGSKMLELVEYGIKMQVTRLQCGAFILAIGLNHTICDAPGYKQFMSAWAEMARGATKPSIAPVWRRDLLIARDPPRITCNHREFDQVQHTLPSSDENLVQRSFFFGPLDIAALRRLIPQHQHCTTFDLITACLWRCRTKALQIETDEDVSMMCIVNGRGRFNPPLPVGYYGNAFAYPATVTTAGKLCRKPFGYAVELINKVKGEMTEEYLQSVADLMVMKGRCLFTTVRSCIVSSLARFNLREVDFGWGEAVYGGVAQAGAGRFLGVSYFCSAKNGKGEEGIIFPIWLPAEAMERFAEEFNLMLGNKNQPQTRSATFIMSTL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01730 479 Gene3D - 8 238 IPR023213 -
Vimu2g01730 479 Gene3D - 239 457 IPR023213 -
Vimu2g01730 479 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 20 453 - -
Vimu2g01730 479 Pfam Transferase family 17 153 - -
Vimu2g01730 479 Pfam Transferase family 171 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01730 Vimu-Chr2 12403519 12405269 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01730 45 457 Monolignol Biosynthesis Gene Families AT5G48930 28.837 3.56e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01730 K19861 - pvu:PHAVU_006G098400g 705.671