Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01728 ATGGCTTCATCATCATCTTCTTCTTCTCTCAAGTTTACAGTGCGAAGGTGCCAACCCCAGCTGGTGCCTCCTGCTATCCCTACTCCTCATGAATTTAAGCCACTTTCCGACATTGATGATCAAGAAGCCCTGCGTATCCACCTTCCCATGATACACATTTATCGAAAGCAAGCATCAATGGCAGAGAAAGACCCAGTTCAAGTCATTCGCCAAGCACTGTCAAAGACACTTGTCTTCTATTACCCATTTGCGGGTAGGCTCATAGAGGGGCCTCACCGCAAATTGATGGTGGATTGCACCGGAGAAGGTGTCATGTTCATCGAGGCCGATGCAGACGTCACACTTGATCAGCTTGGCGATTCTCTCTACCCTCCATTCCCATGCTTCCATGAACTGCTATACTATGTCCCTGGCACACAACAAATTACCAACACTCCCCTTCTACTTGTACAGGCGACACGATTCGAGTGTGGTGGTTTGATATTAGCCATCGGTCTCAATCACACCATGTGTGATGCACCCGGTTACAAACAATTCATGAGCGCGTGGGCGGAAATGGCTAGAGGTGCAACCAAACCTTCCATTGCACCAGTGTGGCGTAGGGATCTCCTAATGGCAAGAGACCCACCTCGCATTACATGCAACCATCGTGAATTCGAGCAAGTCCAAGATACCCTTCCTTCTTCAGATCAAAACTTGGTTCAACGATCATTCTTCATTGGACCACTCGATATAGCTGCACTTCGGCGCTTGATTCCCCAACACCTTCAGCACTGCACCACATTTGATCTCATCACAGCATGCCTCTGGCGTTGTCGCACAAAAGCACTGCAGATAGAGGCAGACGAGGATGTTCGCATGATGTGCATAGTCAACGGACGTGGTCGGTTCAATCCTCCACTTCCTGTTGGTTTCTACGGCAACGTTTTTGCATATCCGGCGGCAGTAACGACTGCAGGGAAGCTTTGCAGAAACCCATTTGGGTATGCGGTGGAATTGATAAATAAAGTGAAAGGTGAGATGACAGAAGAGTATCTTCAATCTGTTGCAGACCTGATGGTGATGAAGGGACGATGCTTATTCACAACTGTGAGGTCTTTTGCTGTGTCATATTTGACACGTATGAACCTTAGAGAAGTGGATTTTGGTTGGGGTGACGCTGTGTATGGTGGAGTGGCCCAAGCTGGGGTTGGGAGCTTCTCAGGAGCTTCGTATTTCTGTTCTGCTAAGAATGAAAAAGGAGAAGAAGGCATAATATTTCCGATTTGGTTACCTGCTGAAGCTATGGAGAGGTTTGCTAAAGAGTTTAACCACATGCTATGCAACAAAAACCAAACCCAAACCAGTTCTGCTACTTTTATAATGTCTACTCTGTAA 1377 0.472 MASSSSSSSLKFTVRRCQPQLVPPAIPTPHEFKPLSDIDDQEALRIHLPMIHIYRKQASMAEKDPVQVIRQALSKTLVFYYPFAGRLIEGPHRKLMVDCTGEGVMFIEADADVTLDQLGDSLYPPFPCFHELLYYVPGTQQITNTPLLLVQATRFECGGLILAIGLNHTMCDAPGYKQFMSAWAEMARGATKPSIAPVWRRDLLMARDPPRITCNHREFEQVQDTLPSSDQNLVQRSFFIGPLDIAALRRLIPQHLQHCTTFDLITACLWRCRTKALQIEADEDVRMMCIVNGRGRFNPPLPVGFYGNVFAYPAAVTTAGKLCRNPFGYAVELINKVKGEMTEEYLQSVADLMVMKGRCLFTTVRSFAVSYLTRMNLREVDFGWGDAVYGGVAQAGVGSFSGASYFCSAKNEKGEEGIIFPIWLPAEAMERFAKEFNHMLCNKNQTQTSSATFIMSTL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01728 458 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 20 432 - -
Vimu2g01728 458 Gene3D - 217 438 IPR023213 -
Vimu2g01728 458 Pfam Transferase family 17 439 - -
Vimu2g01728 458 Gene3D - 8 216 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01728 Vimu-Chr2 12381930 12383675 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01728 10 434 Monolignol Biosynthesis Gene Families AT5G48930 29.478 1.54e-53 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01728 K19861 - pvu:PHAVU_006G098400g 728.783