Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01727 ATGGCCTCATCATCATCTTCTTCTTCTCTCAAGTTTACAGTGCGAAGGTGCCAAACCCAGCTGGTGCCTCCTACTATCCCTACTCCTCATGAATTTAAGCCACTTTCCGACATTGATGATCAAGAAGCCCTTCGTATCCACGTTCCGATGATACAAATTTATCGAAAGCAAGCATCAATGGCAGAGAAAGACCCAGTTCAAGTCATTCGCGAAGCACTGTCACAGACACTTGTCTTCTATTACCCATTTGCAGGTAGGCTTAGAGAGGGGCCTCACCGTAAGTTGATGGTGGATTGCACTGGAGAAGGTGCCATGTTCGTTGAGGCTGATGCAGACATCACACTTGATCAGTTTGGCGATGCTCTTTACCCTCCATTCCCATGCTTCCATGAACTGCTATACGATGTCCCTGGCACACAAGAAATTACCAACACTCCCCTTCTACTTGTATAG 453 0.468 MASSSSSSSLKFTVRRCQTQLVPPTIPTPHEFKPLSDIDDQEALRIHVPMIQIYRKQASMAEKDPVQVIREALSQTLVFYYPFAGRLREGPHRKLMVDCTGEGAMFVEADADITLDQFGDALYPPFPCFHELLYDVPGTQEITNTPLLLV 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01727 150 Pfam Transferase family 14 150 - -
Vimu2g01727 150 PANTHER ACYL TRANSFERASE 4 12 122 - -
Vimu2g01727 150 Gene3D - 13 150 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01727 Vimu-Chr2 12351716 12352168 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01727 10 150 Monolignol Biosynthesis Gene Families AT5G48930 34.043 3.12e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01727 K19861 - vra:106774835 260.381